LICENSE
README.md
pyproject.toml
doc/create_conf_doc.py
doc/generate_variables_file.py
nabu/__init__.py
nabu/tests.py
nabu/testutils.py
nabu/utils.py
nabu.egg-info/PKG-INFO
nabu.egg-info/SOURCES.txt
nabu.egg-info/dependency_links.txt
nabu.egg-info/entry_points.txt
nabu.egg-info/requires.txt
nabu.egg-info/top_level.txt
nabu/app/__init__.py
nabu/app/bootstrap.py
nabu/app/bootstrap_stitching.py
nabu/app/cast_volume.py
nabu/app/cli_configs.py
nabu/app/compare_volumes.py
nabu/app/composite_cor.py
nabu/app/create_distortion_map_from_poly.py
nabu/app/diag_to_pix.py
nabu/app/diag_to_rot.py
nabu/app/double_flatfield.py
nabu/app/estimate_motion.py
nabu/app/flip_volume_vertically.py
nabu/app/histogram.py
nabu/app/multicor.py
nabu/app/parse_reconstruction_log.py
nabu/app/pcaflats.py
nabu/app/prepare_weights_double.py
nabu/app/reconstruct.py
nabu/app/reconstruct_helical.py
nabu/app/reduce_dark_flat.py
nabu/app/rotate.py
nabu/app/shrink_dataset.py
nabu/app/stitching.py
nabu/app/utils.py
nabu/app/validator.py
nabu/app/tests/__init__.py
nabu/app/tests/test_reduce_dark_flat.py
nabu/cuda/__init__.py
nabu/cuda/kernel.py
nabu/cuda/processing.py
nabu/cuda/utils.py
nabu/cuda/src/ElementOp.cu
nabu/cuda/src/backproj.cu
nabu/cuda/src/backproj_polar.cu
nabu/cuda/src/boundary.h
nabu/cuda/src/clip_circle.cu
nabu/cuda/src/cone.cu
nabu/cuda/src/convolution.cu
nabu/cuda/src/dfi_fftshift.cu
nabu/cuda/src/flatfield.cu
nabu/cuda/src/fourier_wavelets.cu
nabu/cuda/src/halftomo.cu
nabu/cuda/src/helical_padding.cu
nabu/cuda/src/hierarchical_backproj.cu
nabu/cuda/src/histogram.cu
nabu/cuda/src/interpolation.cu
nabu/cuda/src/medfilt.cu
nabu/cuda/src/normalization.cu
nabu/cuda/src/padding.cu
nabu/cuda/src/proj.cu
nabu/cuda/src/rotation.cu
nabu/cuda/src/transpose.cu
nabu/cuda/tests/__init__.py
nabu/estimation/__init__.py
nabu/estimation/alignment.py
nabu/estimation/cor.py
nabu/estimation/cor_sino.py
nabu/estimation/distortion.py
nabu/estimation/focus.py
nabu/estimation/motion.py
nabu/estimation/tilt.py
nabu/estimation/translation.py
nabu/estimation/utils.py
nabu/estimation/tests/__init__.py
nabu/estimation/tests/test_alignment.py
nabu/estimation/tests/test_cor.py
nabu/estimation/tests/test_focus.py
nabu/estimation/tests/test_motion_estimation.py
nabu/estimation/tests/test_tilt.py
nabu/estimation/tests/test_translation.py
nabu/io/__init__.py
nabu/io/cast_volume.py
nabu/io/detector_distortion.py
nabu/io/reader.py
nabu/io/utils.py
nabu/io/writer.py
nabu/io/tests/__init__.py
nabu/io/tests/test_cast_volume.py
nabu/io/tests/test_readers.py
nabu/io/tests/test_remove_volume.py
nabu/io/tests/test_writers.py
nabu/misc/__init__.py
nabu/misc/binning.py
nabu/misc/filters.py
nabu/misc/fourier_filters.py
nabu/misc/padding.py
nabu/misc/plotting.py
nabu/misc/utils.py
nabu/misc/tests/__init__.py
nabu/misc/tests/test_binning.py
nabu/misc/tests/test_interpolation.py
nabu/opencl/__init__.py
nabu/opencl/kernel.py
nabu/opencl/memcpy.py
nabu/opencl/processing.py
nabu/opencl/utils.py
nabu/opencl/src/ElementOp.cl
nabu/opencl/src/backproj.cl
nabu/opencl/src/clip_circle.cl
nabu/opencl/src/fftshift.cl
nabu/opencl/src/halftomo.cl
nabu/opencl/src/padding.cl
nabu/opencl/src/roll.cl
nabu/opencl/src/transpose.cl
nabu/opencl/tests/__init__.py
nabu/pipeline/__init__.py
nabu/pipeline/config.py
nabu/pipeline/config_validators.py
nabu/pipeline/datadump.py
nabu/pipeline/dataset_validator.py
nabu/pipeline/detector_distortion_provider.py
nabu/pipeline/estimators.py
nabu/pipeline/params.py
nabu/pipeline/processconfig.py
nabu/pipeline/reader.py
nabu/pipeline/tasks.py
nabu/pipeline/utils.py
nabu/pipeline/writer.py
nabu/pipeline/fullfield/__init__.py
nabu/pipeline/fullfield/chunked.py
nabu/pipeline/fullfield/chunked_cuda.py
nabu/pipeline/fullfield/computations.py
nabu/pipeline/fullfield/dataset_validator.py
nabu/pipeline/fullfield/get_double_flatfield.py
nabu/pipeline/fullfield/nabu_config.py
nabu/pipeline/fullfield/processconfig.py
nabu/pipeline/fullfield/reconstruction.py
nabu/pipeline/helical/__init__.py
nabu/pipeline/helical/dataset_validator.py
nabu/pipeline/helical/fbp.py
nabu/pipeline/helical/filtering.py
nabu/pipeline/helical/gridded_accumulator.py
nabu/pipeline/helical/helical_chunked_regridded.py
nabu/pipeline/helical/helical_chunked_regridded_cuda.py
nabu/pipeline/helical/helical_reconstruction.py
nabu/pipeline/helical/helical_utils.py
nabu/pipeline/helical/nabu_config.py
nabu/pipeline/helical/processconfig.py
nabu/pipeline/helical/span_strategy.py
nabu/pipeline/helical/weight_balancer.py
nabu/pipeline/helical/tests/__init__.py
nabu/pipeline/tests/__init__.py
nabu/pipeline/tests/test_estimators.py
nabu/pipeline/tests/test_tasks.py
nabu/pipeline/xrdct/__init__.py
nabu/preproc/__init__.py
nabu/preproc/alignment.py
nabu/preproc/ccd.py
nabu/preproc/ccd_cuda.py
nabu/preproc/ctf.py
nabu/preproc/ctf_cuda.py
nabu/preproc/distortion.py
nabu/preproc/double_flatfield.py
nabu/preproc/double_flatfield_cuda.py
nabu/preproc/double_flatfield_variable_region.py
nabu/preproc/flatfield.py
nabu/preproc/flatfield_cuda.py
nabu/preproc/flatfield_variable_region.py
nabu/preproc/phase.py
nabu/preproc/phase_cuda.py
nabu/preproc/shift.py
nabu/preproc/shift_cuda.py
nabu/preproc/tests/__init__.py
nabu/preproc/tests/test_ccd_corr.py
nabu/preproc/tests/test_ctf.py
nabu/preproc/tests/test_double_flatfield.py
nabu/preproc/tests/test_flatfield.py
nabu/preproc/tests/test_paganin.py
nabu/preproc/tests/test_pcaflats.py
nabu/preproc/tests/test_vshift.py
nabu/processing/__init__.py
nabu/processing/azim.py
nabu/processing/convolution_cuda.py
nabu/processing/fft_base.py
nabu/processing/fft_cuda.py
nabu/processing/fft_opencl.py
nabu/processing/fftshift.py
nabu/processing/histogram.py
nabu/processing/histogram_cuda.py
nabu/processing/kernel_base.py
nabu/processing/medfilt_cuda.py
nabu/processing/muladd.py
nabu/processing/muladd_cuda.py
nabu/processing/padding_base.py
nabu/processing/padding_cuda.py
nabu/processing/padding_opencl.py
nabu/processing/processing_base.py
nabu/processing/roll_opencl.py
nabu/processing/rotation.py
nabu/processing/rotation_cuda.py
nabu/processing/transpose.py
nabu/processing/unsharp.py
nabu/processing/unsharp_cuda.py
nabu/processing/unsharp_opencl.py
nabu/processing/tests/__init__.py
nabu/processing/tests/test_fft.py
nabu/processing/tests/test_fftshift.py
nabu/processing/tests/test_histogram.py
nabu/processing/tests/test_medfilt.py
nabu/processing/tests/test_muladd.py
nabu/processing/tests/test_padding.py
nabu/processing/tests/test_roll.py
nabu/processing/tests/test_rotation.py
nabu/processing/tests/test_transpose.py
nabu/processing/tests/test_unsharp.py
nabu/reconstruction/__init__.py
nabu/reconstruction/cone.py
nabu/reconstruction/fbp.py
nabu/reconstruction/fbp_base.py
nabu/reconstruction/fbp_opencl.py
nabu/reconstruction/filtering.py
nabu/reconstruction/filtering_cuda.py
nabu/reconstruction/filtering_opencl.py
nabu/reconstruction/hbp.py
nabu/reconstruction/mlem.py
nabu/reconstruction/projection.py
nabu/reconstruction/reconstructor.py
nabu/reconstruction/reconstructor_cuda.py
nabu/reconstruction/rings.py
nabu/reconstruction/rings_cuda.py
nabu/reconstruction/sinogram.py
nabu/reconstruction/sinogram_cuda.py
nabu/reconstruction/sinogram_opencl.py
nabu/reconstruction/tests/__init__.py
nabu/reconstruction/tests/test_cone.py
nabu/reconstruction/tests/test_deringer.py
nabu/reconstruction/tests/test_fbp.py
nabu/reconstruction/tests/test_filtering.py
nabu/reconstruction/tests/test_halftomo.py
nabu/reconstruction/tests/test_mlem.py
nabu/reconstruction/tests/test_projector.py
nabu/reconstruction/tests/test_reconstructor.py
nabu/reconstruction/tests/test_sino_normalization.py
nabu/resources/__init__.py
nabu/resources/cor.py
nabu/resources/dataset_analyzer.py
nabu/resources/gpu.py
nabu/resources/logger.py
nabu/resources/nxflatfield.py
nabu/resources/utils.py
nabu/resources/cli/__init__.py
nabu/resources/templates/__init__.py
nabu/resources/templates/bm05_pag.conf
nabu/resources/templates/id16_ctf.conf
nabu/resources/templates/id16_holo.conf
nabu/resources/templates/id16a_fluo.conf
nabu/resources/templates/id19_pag.conf
nabu/resources/tests/__init__.py
nabu/resources/tests/test_dataset_analyzer.py
nabu/resources/tests/test_extract.py
nabu/resources/tests/test_nxflatfield.py
nabu/resources/tests/test_units.py
nabu/stitching/__init__.py
nabu/stitching/alignment.py
nabu/stitching/config.py
nabu/stitching/definitions.py
nabu/stitching/frame_composition.py
nabu/stitching/overlap.py
nabu/stitching/sample_normalization.py
nabu/stitching/single_axis_stitching.py
nabu/stitching/slurm_utils.py
nabu/stitching/stitcher_2D.py
nabu/stitching/y_stitching.py
nabu/stitching/z_stitching.py
nabu/stitching/stitcher/__init__.py
nabu/stitching/stitcher/base.py
nabu/stitching/stitcher/post_processing.py
nabu/stitching/stitcher/pre_processing.py
nabu/stitching/stitcher/single_axis.py
nabu/stitching/stitcher/stitcher.py
nabu/stitching/stitcher/y_stitcher.py
nabu/stitching/stitcher/z_stitcher.py
nabu/stitching/stitcher/dumper/__init__.py
nabu/stitching/stitcher/dumper/base.py
nabu/stitching/stitcher/dumper/postprocessing.py
nabu/stitching/stitcher/dumper/preprocessing.py
nabu/stitching/tests/test_alignment.py
nabu/stitching/tests/test_config.py
nabu/stitching/tests/test_frame_composition.py
nabu/stitching/tests/test_overlap.py
nabu/stitching/tests/test_sample_normalization.py
nabu/stitching/tests/test_slurm_utils.py
nabu/stitching/tests/test_utils.py
nabu/stitching/tests/test_y_preprocessing_stitching.py
nabu/stitching/tests/test_z_postprocessing_stitching.py
nabu/stitching/tests/test_z_preprocessing_stitching.py
nabu/stitching/utils/__init__.py
nabu/stitching/utils/post_processing.py
nabu/stitching/utils/utils.py
nabu/stitching/utils/tests/__init__.py
nabu/stitching/utils/tests/test_post-processing.py
nabu/thirdparty/__init__.py
nabu/thirdparty/algotom_convert_sino.py
nabu/thirdparty/pore3d_deringer_munch.py
nabu/thirdparty/tomocupy_remove_stripe.py
nabu/thirdparty/tomopy_phase.py
nabu/thirdparty/tomwer_load_flats_darks.py