__version__ = "0.1.7"

from .processing import load_metadata_from_file, process_mzml_to_sparse, save_dataset_as_sparse_h5, save_single_mzml_as_sparse_h5
from .dataset import DynamicSparseH5Dataset
from .visualization import plot_sample_image
from .simulation import generate_simulation_data, simulate_background
from .model import MzrtCNN
from .trainer import train_model, predict, cross_validate
from .alignment import compute_rt_shifts, align_h5

__all__ = [
    "load_metadata_from_file",
    "process_mzml_to_sparse",
    "save_dataset_as_sparse_h5",
    "save_single_mzml_as_sparse_h5",
    "DynamicSparseH5Dataset",
    "plot_sample_image",
    "generate_simulation_data",
    "simulate_background",
    "MzrtCNN",
    "train_model",
    "predict",
    "cross_validate",
    "compute_rt_shifts",
    "align_h5",
]
