LICENSE
MANIFEST.in
README.md
setup.py
bin/mutagene
mutagene/__init__.py
mutagene/__main__.py
mutagene/dna.py
mutagene/version.py
mutagene.egg-info/PKG-INFO
mutagene.egg-info/SOURCES.txt
mutagene.egg-info/dependency_links.txt
mutagene.egg-info/not-zip-safe
mutagene.egg-info/requires.txt
mutagene.egg-info/top_level.txt
mutagene/benchmark/__init__.py
mutagene/benchmark/benchmark.py
mutagene/benchmark/deconstructsigs.py
mutagene/benchmark/generate_benchmark.py
mutagene/benchmark/multiple_benchmark.py
mutagene/cli/__init__.py
mutagene/cli/benchmark_menu.py
mutagene/cli/fetch_menu.py
mutagene/cli/motif_menu.py
mutagene/cli/profile_menu.py
mutagene/cli/rank_menu.py
mutagene/cli/signature_menu.py
mutagene/data/motifs/motifs.json
mutagene/data/signatures/A_1.profile
mutagene/data/signatures/A_2.profile
mutagene/data/signatures/A_3.profile
mutagene/data/signatures/A_4.profile
mutagene/data/signatures/A_5.profile
mutagene/data/signatures/B_1.profile
mutagene/data/signatures/B_10.profile
mutagene/data/signatures/B_2.profile
mutagene/data/signatures/B_3.profile
mutagene/data/signatures/B_4.profile
mutagene/data/signatures/B_5.profile
mutagene/data/signatures/B_6.profile
mutagene/data/signatures/B_7.profile
mutagene/data/signatures/B_8.profile
mutagene/data/signatures/B_9.profile
mutagene/data/signatures/C_1.profile
mutagene/data/signatures/C_10.profile
mutagene/data/signatures/C_11.profile
mutagene/data/signatures/C_12.profile
mutagene/data/signatures/C_13.profile
mutagene/data/signatures/C_14.profile
mutagene/data/signatures/C_15.profile
mutagene/data/signatures/C_16.profile
mutagene/data/signatures/C_17.profile
mutagene/data/signatures/C_18.profile
mutagene/data/signatures/C_19.profile
mutagene/data/signatures/C_2.profile
mutagene/data/signatures/C_20.profile
mutagene/data/signatures/C_21.profile
mutagene/data/signatures/C_22.profile
mutagene/data/signatures/C_23.profile
mutagene/data/signatures/C_24.profile
mutagene/data/signatures/C_25.profile
mutagene/data/signatures/C_26.profile
mutagene/data/signatures/C_27.profile
mutagene/data/signatures/C_28.profile
mutagene/data/signatures/C_29.profile
mutagene/data/signatures/C_3.profile
mutagene/data/signatures/C_30.profile
mutagene/data/signatures/C_4.profile
mutagene/data/signatures/C_5.profile
mutagene/data/signatures/C_6.profile
mutagene/data/signatures/C_7.profile
mutagene/data/signatures/C_8.profile
mutagene/data/signatures/C_9.profile
mutagene/data/signatures/Kucab.txt
mutagene/data/signatures/sigProfiler_SBS_signatures_2019_05_22.csv
mutagene/io/__init__.py
mutagene/io/_export_cohort.py
mutagene/io/cohorts.py
mutagene/io/context_window.py
mutagene/io/decomposition.py
mutagene/io/ensembl.py
mutagene/io/fetch.py
mutagene/io/gdc.py
mutagene/io/motifs.py
mutagene/io/mutations_profile.py
mutagene/io/profile.py
mutagene/io/protein_mutations_MAF.py
mutagene/motifs/__init__.py
mutagene/mutability/__init__.py
mutagene/mutability/mutability.py
mutagene/profiles/__init__.py
mutagene/profiles/profile.py
mutagene/reports/__init__.py
mutagene/reports/nci60.py
mutagene/signatures/__init__.py
mutagene/signatures/identify.py