Metadata-Version: 2.1
Name: mushi
Version: 1.0
Summary: 🍄 [mu]tation [s]pectrum [h]istory [i]nference 🍄
Home-page: https://github.com/harrispopgen/mushi
Author: William DeWitt
Author-email: wsdewitt@gmail.com
License: UNKNOWN
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: ==3.7.*
Description-Content-Type: text/markdown
Requires-Dist: jax
Requires-Dist: jaxlib
Requires-Dist: prox-tv
Requires-Dist: seaborn
Requires-Dist: pandas
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: scipy

![](docs/_static/logo.png)

A Python package for: [__mu__]tation [__s__]pectrum [__h__]istory [__i__]nference

![build and test](https://github.com/harrispopgen/mushi/workflows/build%20and%20test/badge.svg)
![Python package](https://github.com/harrispopgen/mushi/workflows/Python%20package/badge.svg)

#### See [documentation](https://harrispopgen.github.io/mushi) for install and usage information.

Pairs well with the package [`mutyper`](https://github.com/harrispopgen/mutyper), which assigns mutation types to SNPs in VCF files.


