.gitignore
.pre-commit-config.yaml
LICENSE
MANIFEST.in
README.md
mkdocs.yml
pyproject.toml
tox.ini
.github/workflows/documentation_main.yml
.github/workflows/documentation_release.yml
.github/workflows/test_and_deploy.yml
.github/workflows/test_cron.yml
docs/chart.md
docs/code_example.md
docs/contributing.md
docs/data_formats.md
docs/docs_requirements.txt
docs/extension_api_fusion.md
docs/extension_api_global_param_resolution.md
docs/extension_api_pairwise_registration.md
docs/features.md
docs/implementation_details.md
docs/index.md
docs/installation.md
docs/napari_stitcher.md
docs/neuroglancer.md
docs/notebooks.md
docs/objects.md
docs/related_projects.md
docs/stitching_in_the_browser.md
docs/troubleshoot_fusion.md
docs/troubleshoot_registration_OOM.md
docs/troubleshoot_registration_accuracy.md
docs/api/fusion.md
docs/api/registration.md
docs/images/20230929_screenshot.png
docs/images/logo.png
docs/images/logo.svg
docs/images/logo_blue.svg
docs/images/logo_color.png
docs/images/logo_color.svg
docs/images/tile_configuration.png
notebooks/stitching_bigstitcher_grid_2d_ome_zarr.ipynb
notebooks/stitching_bigstitcher_grid_3d_ome_zarr.ipynb
notebooks/stitching_bigstitcher_multiview.ipynb
notebooks/stitching_exaspim.ipynb
notebooks/stitching_in_the_browser.ipynb
notebooks/stitching_mesospim.ipynb
notebooks/stitching_multipos_2D_czi.ipynb
src/multiview_stitcher/__init__.py
src/multiview_stitcher/_version.py
src/multiview_stitcher/czi_utils.py
src/multiview_stitcher/czifile_patch.py
src/multiview_stitcher/fusion.py
src/multiview_stitcher/io.py
src/multiview_stitcher/misc_utils.py
src/multiview_stitcher/msi_utils.py
src/multiview_stitcher/mv_graph.py
src/multiview_stitcher/ngff_utils.py
src/multiview_stitcher/param_utils.py
src/multiview_stitcher/registration.py
src/multiview_stitcher/sample_data.py
src/multiview_stitcher/spatial_image_utils.py
src/multiview_stitcher/transformation.py
src/multiview_stitcher/transforms.py
src/multiview_stitcher/vis_utils.py
src/multiview_stitcher/weights.py
src/multiview_stitcher.egg-info/PKG-INFO
src/multiview_stitcher.egg-info/SOURCES.txt
src/multiview_stitcher.egg-info/dependency_links.txt
src/multiview_stitcher.egg-info/requires.txt
src/multiview_stitcher.egg-info/top_level.txt
src/multiview_stitcher/_benchmarks/__init__.py
src/multiview_stitcher/_benchmarks/test_core.py
src/multiview_stitcher/_tests/__init__.py
src/multiview_stitcher/_tests/_create_test_params.ipynb
src/multiview_stitcher/_tests/test_bench.py
src/multiview_stitcher/_tests/test_fusion.py
src/multiview_stitcher/_tests/test_integration.py
src/multiview_stitcher/_tests/test_io.py
src/multiview_stitcher/_tests/test_msi_utils.py
src/multiview_stitcher/_tests/test_mv_graph.py
src/multiview_stitcher/_tests/test_ngff_utils.py
src/multiview_stitcher/_tests/test_param_utils.py
src/multiview_stitcher/_tests/test_quickstart.py
src/multiview_stitcher/_tests/test_registration.py
src/multiview_stitcher/_tests/test_sample_data.py
src/multiview_stitcher/_tests/test_spatial_image_utils.py
src/multiview_stitcher/_tests/test_vis_utils.py
src/multiview_stitcher/_tests/test_weights.py
src/multiview_stitcher/_tests/quickstart/0_data_preparation.py
src/multiview_stitcher/_tests/quickstart/1_registration.py
src/multiview_stitcher/_tests/quickstart/2_fusion.py
src/multiview_stitcher/_tests/quickstart/3_fusion_large.py
src/multiview_stitcher/test-datasets/mosaic_test.czi