Metadata-Version: 2.1
Name: mssi
Version: 0.1.9
Summary: Multiscale gene-gene correlation for spatial transcriptomics data
License: MIT
Author: Doron Haviv
Requires-Python: >=3.9,<4.0
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Dist: pygsp
Requires-Dist: scipy (==1.11.0)
Description-Content-Type: text/markdown

Multiscale Spectral Similarity Index
======================

An MS-SSIM inspired metric for assessing imputation accuracy in spatial transcriptomics data. MSSI works by iterativly pooling the graph representing the spatial data and relies on the graph-coarsening package (https://github.com/loukasa/graph-coarsening) which can be installed through the commands:

    git clone git@github.com:loukasa/graph-coarsening.git
    cd graph-coarsening
    pip install .
    
And then mssi can be installed via pip:

    pip install mssi
