MANIFEST.in
README.md
pyproject.toml
setup.py
/home/runner/work/mscompress/mscompress/cli/mscompress.c
/home/runner/work/mscompress/mscompress/src/algo.c
/home/runner/work/mscompress/mscompress/src/arguments.c
/home/runner/work/mscompress/mscompress/src/compress.c
/home/runner/work/mscompress/mscompress/src/debug.c
/home/runner/work/mscompress/mscompress/src/decode.c
/home/runner/work/mscompress/mscompress/src/decompress.c
/home/runner/work/mscompress/mscompress/src/encode.c
/home/runner/work/mscompress/mscompress/src/extract.c
/home/runner/work/mscompress/mscompress/src/file.c
/home/runner/work/mscompress/mscompress/src/globals.c
/home/runner/work/mscompress/mscompress/src/mem.c
/home/runner/work/mscompress/mscompress/src/preprocess.c
/home/runner/work/mscompress/mscompress/src/queue.c
/home/runner/work/mscompress/mscompress/src/sys.c
/home/runner/work/mscompress/mscompress/src/zl.c
/home/runner/work/mscompress/mscompress/vendor/base64/lib/codec_choose.c
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/home/runner/work/mscompress/mscompress/vendor/base64/lib/arch/avx/codec.c
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/home/runner/work/mscompress/mscompress/vendor/base64/lib/arch/sse41/codec.c
/home/runner/work/mscompress/mscompress/vendor/base64/lib/arch/sse42/codec.c
/home/runner/work/mscompress/mscompress/vendor/base64/lib/arch/ssse3/codec.c
/home/runner/work/mscompress/mscompress/vendor/base64/lib/tables/tables.c
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/home/runner/work/mscompress/mscompress/vendor/yxml/yxml.c
/home/runner/work/mscompress/mscompress/vendor/zlib/adler32.c
/home/runner/work/mscompress/mscompress/vendor/zlib/adler32_simd.c
/home/runner/work/mscompress/mscompress/vendor/zlib/compress.c
/home/runner/work/mscompress/mscompress/vendor/zlib/crc32.c
/home/runner/work/mscompress/mscompress/vendor/zlib/crc32_simd.c
/home/runner/work/mscompress/mscompress/vendor/zlib/deflate.c
/home/runner/work/mscompress/mscompress/vendor/zlib/infback.c
/home/runner/work/mscompress/mscompress/vendor/zlib/inffast.c
/home/runner/work/mscompress/mscompress/vendor/zlib/inffast_chunk.c
/home/runner/work/mscompress/mscompress/vendor/zlib/inflate.c
/home/runner/work/mscompress/mscompress/vendor/zlib/inftrees.c
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/home/runner/work/mscompress/mscompress/vendor/zlib/uncompr.c
/home/runner/work/mscompress/mscompress/vendor/zlib/zutil.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/debug.c
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/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/error_private.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/fse_decompress.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/pool.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/threading.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/xxhash.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/common/zstd_common.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/fse_compress.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/hist.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/huf_compress.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/zstd_compress.c
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/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/zstd_ldm.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/compress/zstd_opt.c
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/home/runner/work/mscompress/mscompress/vendor/zstd/lib/decompress/huf_decompress.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/decompress/zstd_ddict.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/decompress/zstd_decompress.c
/home/runner/work/mscompress/mscompress/vendor/zstd/lib/decompress/zstd_decompress_block.c
cli/mscompress.c
mscompress/__init__.py
mscompress/_core.c
mscompress/_core.pyi
mscompress/_core.pyx
mscompress/mszx.py
mscompress/py.typed
mscompress/types.py
mscompress/utils.py
mscompress.egg-info/PKG-INFO
mscompress.egg-info/SOURCES.txt
mscompress.egg-info/dependency_links.txt
mscompress.egg-info/not-zip-safe
mscompress.egg-info/requires.txt
mscompress.egg-info/top_level.txt
mscompress/annotations/__init__.py
mscompress/annotations/_base.py
mscompress/annotations/psms/__init__.py
mscompress/annotations/psms/_base.py
mscompress/annotations/psms/_types.py
mscompress/annotations/psms/pepxml.py
mscompress/annotations/psms/percolator.py
mscompress/annotations/psms/reader.py
mscompress/datasets/torch.py
mscompress/metadata/__init__.py
mscompress/metadata/_base.py
mscompress/metadata/_composite.py
mscompress/metadata/_types.py
mscompress/metadata/msz.py
mscompress/metadata/search.py
src/algo.c
src/arguments.c
src/compress.c
src/debug.c
src/decode.c
src/decompress.c
src/encode.c
src/extract.c
src/file.c
src/globals.c
src/mem.c
src/mscompress.h
src/preprocess.c
src/queue.c
src/sys.c
src/zl.c
test/test_annotation_readers.py
test/test_core.py
test/test_dataset.py
test/test_extract.py
test/test_metadata.py
test/test_msz.py
test/test_mszx_extract.py
test/test_mzml.py
vendor/base64/bin/base64.c
vendor/base64/cmake/test-arch.c
vendor/base64/include/libbase64.h
vendor/base64/lib/codec_choose.c
vendor/base64/lib/codecs.h
vendor/base64/lib/config.h
vendor/base64/lib/env.h
vendor/base64/lib/lib.c
vendor/base64/lib/lib_openmp.c
vendor/base64/lib/arch/avx/codec.c
vendor/base64/lib/arch/avx/enc_loop_asm.c
vendor/base64/lib/arch/avx2/codec.c
vendor/base64/lib/arch/avx2/dec_loop.c
vendor/base64/lib/arch/avx2/dec_reshuffle.c
vendor/base64/lib/arch/avx2/enc_loop.c
vendor/base64/lib/arch/avx2/enc_loop_asm.c
vendor/base64/lib/arch/avx2/enc_reshuffle.c
vendor/base64/lib/arch/avx2/enc_translate.c
vendor/base64/lib/arch/avx512/codec.c
vendor/base64/lib/arch/avx512/enc_loop.c
vendor/base64/lib/arch/avx512/enc_reshuffle_translate.c
vendor/base64/lib/arch/generic/codec.c
vendor/base64/lib/arch/generic/dec_head.c
vendor/base64/lib/arch/generic/dec_tail.c
vendor/base64/lib/arch/generic/enc_head.c
vendor/base64/lib/arch/generic/enc_tail.c
vendor/base64/lib/arch/generic/32/dec_loop.c
vendor/base64/lib/arch/generic/32/enc_loop.c
vendor/base64/lib/arch/generic/64/enc_loop.c
vendor/base64/lib/arch/neon32/codec.c
vendor/base64/lib/arch/neon32/dec_loop.c
vendor/base64/lib/arch/neon32/enc_loop.c
vendor/base64/lib/arch/neon32/enc_reshuffle.c
vendor/base64/lib/arch/neon32/enc_translate.c
vendor/base64/lib/arch/neon64/codec.c
vendor/base64/lib/arch/neon64/dec_loop.c
vendor/base64/lib/arch/neon64/enc_loop.c
vendor/base64/lib/arch/neon64/enc_loop_asm.c
vendor/base64/lib/arch/neon64/enc_reshuffle.c
vendor/base64/lib/arch/sse41/codec.c
vendor/base64/lib/arch/sse42/codec.c
vendor/base64/lib/arch/ssse3/codec.c
vendor/base64/lib/arch/ssse3/dec_loop.c
vendor/base64/lib/arch/ssse3/dec_reshuffle.c
vendor/base64/lib/arch/ssse3/enc_loop.c
vendor/base64/lib/arch/ssse3/enc_loop_asm.c
vendor/base64/lib/arch/ssse3/enc_reshuffle.c
vendor/base64/lib/arch/ssse3/enc_translate.c
vendor/base64/lib/tables/table_dec_32bit.h
vendor/base64/lib/tables/table_enc_12bit.h
vendor/base64/lib/tables/table_generator.c
vendor/base64/lib/tables/tables.c
vendor/base64/lib/tables/tables.h
vendor/base64/test/benchmark.c
vendor/base64/test/codec_supported.c
vendor/base64/test/codec_supported.h
vendor/base64/test/moby_dick.h
vendor/base64/test/test_base64.c
vendor/lz4/examples/bench_functions.c
vendor/lz4/examples/blockStreaming_doubleBuffer.c
vendor/lz4/examples/blockStreaming_lineByLine.c
vendor/lz4/examples/blockStreaming_ringBuffer.c
vendor/lz4/examples/dictionaryRandomAccess.c
vendor/lz4/examples/fileCompress.c
vendor/lz4/examples/frameCompress.c
vendor/lz4/examples/print_version.c
vendor/lz4/examples/simple_buffer.c
vendor/lz4/examples/streamingHC_ringBuffer.c
vendor/lz4/lib/lz4.c
vendor/lz4/lib/lz4.h
vendor/lz4/lib/lz4file.c
vendor/lz4/lib/lz4file.h
vendor/lz4/lib/lz4frame.c
vendor/lz4/lib/lz4frame.h
vendor/lz4/lib/lz4frame_static.h
vendor/lz4/lib/lz4hc.c
vendor/lz4/lib/lz4hc.h
vendor/lz4/lib/xxhash.c
vendor/lz4/lib/xxhash.h
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vendor/lz4/ossfuzz/compress_fuzzer.c
vendor/lz4/ossfuzz/compress_hc_fuzzer.c
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vendor/lz4/ossfuzz/fuzz.h
vendor/lz4/ossfuzz/fuzz_data_producer.c
vendor/lz4/ossfuzz/fuzz_data_producer.h
vendor/lz4/ossfuzz/fuzz_helpers.h
vendor/lz4/ossfuzz/lz4_helpers.c
vendor/lz4/ossfuzz/lz4_helpers.h
vendor/lz4/ossfuzz/round_trip_frame_fuzzer.c
vendor/lz4/ossfuzz/round_trip_frame_uncompressed_fuzzer.c
vendor/lz4/ossfuzz/round_trip_fuzzer.c
vendor/lz4/ossfuzz/round_trip_hc_fuzzer.c
vendor/lz4/ossfuzz/round_trip_stream_fuzzer.c
vendor/lz4/ossfuzz/standaloneengine.c
vendor/lz4/programs/bench.c
vendor/lz4/programs/bench.h
vendor/lz4/programs/lorem.c
vendor/lz4/programs/lorem.h
vendor/lz4/programs/lz4cli.c
vendor/lz4/programs/lz4conf.h
vendor/lz4/programs/lz4io.c
vendor/lz4/programs/lz4io.h
vendor/lz4/programs/platform.h
vendor/lz4/programs/threadpool.c
vendor/lz4/programs/threadpool.h
vendor/lz4/programs/timefn.c
vendor/lz4/programs/timefn.h
vendor/lz4/programs/util.c
vendor/lz4/programs/util.h
vendor/lz4/tests/abiTest.c
vendor/lz4/tests/checkFrame.c
vendor/lz4/tests/checkTag.c
vendor/lz4/tests/datagen.c
vendor/lz4/tests/datagen.h
vendor/lz4/tests/datagencli.c
vendor/lz4/tests/decompress-partial-usingDict.c
vendor/lz4/tests/decompress-partial.c
vendor/lz4/tests/frametest.c
vendor/lz4/tests/freestanding.c
vendor/lz4/tests/fullbench.c
vendor/lz4/tests/fuzzer.c
vendor/lz4/tests/loremOut.c
vendor/lz4/tests/loremOut.h
vendor/lz4/tests/roundTripTest.c
vendor/yxml/yxml.c
vendor/yxml/yxml.h
vendor/zlib/adler32.c
vendor/zlib/adler32_simd.c
vendor/zlib/adler32_simd.h
vendor/zlib/chunkcopy.h
vendor/zlib/compress.c
vendor/zlib/crc32.c
vendor/zlib/crc32.h
vendor/zlib/crc32_simd.c
vendor/zlib/crc32_simd.h
vendor/zlib/deflate.c
vendor/zlib/deflate.h
vendor/zlib/gzclose.c
vendor/zlib/gzguts.h
vendor/zlib/gzlib.c
vendor/zlib/gzread.c
vendor/zlib/gzwrite.c
vendor/zlib/infback.c
vendor/zlib/inffast.c
vendor/zlib/inffast.h
vendor/zlib/inffast_chunk.c
vendor/zlib/inffast_chunk.h
vendor/zlib/inffixed.h
vendor/zlib/inflate.c
vendor/zlib/inflate.h
vendor/zlib/inftrees.c
vendor/zlib/inftrees.h
vendor/zlib/trees.c
vendor/zlib/trees.h
vendor/zlib/uncompr.c
vendor/zlib/zconf.h
vendor/zlib/zlib.h
vendor/zlib/zutil.c
vendor/zlib/zutil.h
vendor/zlib/examples/enough.c
vendor/zlib/examples/fitblk.c
vendor/zlib/examples/gun.c
vendor/zlib/examples/gzappend.c
vendor/zlib/examples/gzjoin.c
vendor/zlib/examples/gzlog.c
vendor/zlib/examples/gzlog.h
vendor/zlib/examples/gznorm.c
vendor/zlib/examples/zpipe.c
vendor/zlib/examples/zran.c
vendor/zlib/examples/zran.h
vendor/zlib/test/example.c
vendor/zlib/test/infcover.c
vendor/zlib/test/minigzip.c
vendor/zstd/build/single_file_libs/zstd-in.c
vendor/zstd/build/single_file_libs/zstddeclib-in.c
vendor/zstd/build/single_file_libs/examples/emscripten.c
vendor/zstd/build/single_file_libs/examples/roundtrip.c
vendor/zstd/build/single_file_libs/examples/simple.c
vendor/zstd/contrib/diagnose_corruption/check_flipped_bits.c
vendor/zstd/contrib/externalSequenceProducer/main.c
vendor/zstd/contrib/externalSequenceProducer/sequence_producer.c
vendor/zstd/contrib/externalSequenceProducer/sequence_producer.h
vendor/zstd/contrib/largeNbDicts/largeNbDicts.c
vendor/zstd/contrib/linux-kernel/decompress_sources.h
vendor/zstd/contrib/linux-kernel/linux_zstd.h
vendor/zstd/contrib/linux-kernel/mem.h
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vendor/zstd/contrib/linux-kernel/zstd_compress_module.c
vendor/zstd/contrib/linux-kernel/zstd_decompress_module.c
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vendor/zstd/contrib/linux-kernel/test/static_test.c
vendor/zstd/contrib/linux-kernel/test/test.c
vendor/zstd/contrib/linux-kernel/test/include/linux/compiler.h
vendor/zstd/contrib/linux-kernel/test/include/linux/errno.h
vendor/zstd/contrib/linux-kernel/test/include/linux/kernel.h
vendor/zstd/contrib/linux-kernel/test/include/linux/limits.h
vendor/zstd/contrib/linux-kernel/test/include/linux/math64.h
vendor/zstd/contrib/linux-kernel/test/include/linux/module.h
vendor/zstd/contrib/linux-kernel/test/include/linux/printk.h
vendor/zstd/contrib/linux-kernel/test/include/linux/stddef.h
vendor/zstd/contrib/linux-kernel/test/include/linux/swab.h
vendor/zstd/contrib/linux-kernel/test/include/linux/types.h
vendor/zstd/contrib/linux-kernel/test/include/linux/unaligned.h
vendor/zstd/contrib/linux-kernel/test/include/linux/xxhash.h
vendor/zstd/contrib/match_finders/zstd_edist.c
vendor/zstd/contrib/match_finders/zstd_edist.h
vendor/zstd/contrib/pzstd/ErrorHolder.h
vendor/zstd/contrib/pzstd/Logging.h
vendor/zstd/contrib/pzstd/Options.h
vendor/zstd/contrib/pzstd/Pzstd.h
vendor/zstd/contrib/pzstd/SkippableFrame.h
vendor/zstd/contrib/pzstd/test/RoundTrip.h
vendor/zstd/contrib/pzstd/utils/Buffer.h
vendor/zstd/contrib/pzstd/utils/FileSystem.h
vendor/zstd/contrib/pzstd/utils/Likely.h
vendor/zstd/contrib/pzstd/utils/Portability.h
vendor/zstd/contrib/pzstd/utils/Range.h
vendor/zstd/contrib/pzstd/utils/ResourcePool.h
vendor/zstd/contrib/pzstd/utils/ScopeGuard.h
vendor/zstd/contrib/pzstd/utils/ThreadPool.h
vendor/zstd/contrib/pzstd/utils/WorkQueue.h
vendor/zstd/contrib/recovery/recover_directory.c
vendor/zstd/contrib/seekable_format/zstd_seekable.h
vendor/zstd/contrib/seekable_format/zstdseek_compress.c
vendor/zstd/contrib/seekable_format/zstdseek_decompress.c
vendor/zstd/contrib/seekable_format/examples/parallel_compression.c
vendor/zstd/contrib/seekable_format/examples/parallel_processing.c
vendor/zstd/contrib/seekable_format/examples/seekable_compression.c
vendor/zstd/contrib/seekable_format/examples/seekable_decompression.c
vendor/zstd/contrib/seekable_format/examples/seekable_decompression_mem.c
vendor/zstd/contrib/seekable_format/tests/seekable_tests.c
vendor/zstd/contrib/seqBench/seqBench.c
vendor/zstd/doc/educational_decoder/harness.c
vendor/zstd/doc/educational_decoder/zstd_decompress.c
vendor/zstd/doc/educational_decoder/zstd_decompress.h
vendor/zstd/examples/common.h
vendor/zstd/examples/dictionary_compression.c
vendor/zstd/examples/dictionary_decompression.c
vendor/zstd/examples/multiple_simple_compression.c
vendor/zstd/examples/multiple_streaming_compression.c
vendor/zstd/examples/simple_compression.c
vendor/zstd/examples/simple_decompression.c
vendor/zstd/examples/streaming_compression.c
vendor/zstd/examples/streaming_compression_thread_pool.c
vendor/zstd/examples/streaming_decompression.c
vendor/zstd/examples/streaming_memory_usage.c
vendor/zstd/lib/zdict.h
vendor/zstd/lib/zstd.h
vendor/zstd/lib/zstd_errors.h
vendor/zstd/lib/common/allocations.h
vendor/zstd/lib/common/bits.h
vendor/zstd/lib/common/bitstream.h
vendor/zstd/lib/common/compiler.h
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vendor/zstd/lib/common/entropy_common.c
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vendor/zstd/lib/common/fse.h
vendor/zstd/lib/common/fse_decompress.c
vendor/zstd/lib/common/huf.h
vendor/zstd/lib/common/mem.h
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vendor/zstd/lib/common/portability_macros.h
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vendor/zstd/lib/common/zstd_trace.h
vendor/zstd/lib/compress/clevels.h
vendor/zstd/lib/compress/fse_compress.c
vendor/zstd/lib/compress/hist.c
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vendor/zstd/lib/compress/huf_compress.c
vendor/zstd/lib/compress/zstd_compress.c
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vendor/zstd/lib/compress/zstd_compress_literals.c
vendor/zstd/lib/compress/zstd_compress_literals.h
vendor/zstd/lib/compress/zstd_compress_sequences.c
vendor/zstd/lib/compress/zstd_compress_sequences.h
vendor/zstd/lib/compress/zstd_compress_superblock.c
vendor/zstd/lib/compress/zstd_compress_superblock.h
vendor/zstd/lib/compress/zstd_cwksp.h
vendor/zstd/lib/compress/zstd_double_fast.c
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vendor/zstd/lib/compress/zstd_fast.c
vendor/zstd/lib/compress/zstd_fast.h
vendor/zstd/lib/compress/zstd_lazy.c
vendor/zstd/lib/compress/zstd_lazy.h
vendor/zstd/lib/compress/zstd_ldm.c
vendor/zstd/lib/compress/zstd_ldm.h
vendor/zstd/lib/compress/zstd_ldm_geartab.h
vendor/zstd/lib/compress/zstd_opt.c
vendor/zstd/lib/compress/zstd_opt.h
vendor/zstd/lib/compress/zstd_preSplit.c
vendor/zstd/lib/compress/zstd_preSplit.h
vendor/zstd/lib/compress/zstdmt_compress.c
vendor/zstd/lib/compress/zstdmt_compress.h
vendor/zstd/lib/decompress/huf_decompress.c
vendor/zstd/lib/decompress/zstd_ddict.c
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vendor/zstd/lib/decompress/zstd_decompress.c
vendor/zstd/lib/decompress/zstd_decompress_block.c
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vendor/zstd/lib/legacy/zstd_legacy.h
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vendor/zstd/programs/lorem.c
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vendor/zstd/zlibWrapper/gzguts.h
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