LICENSE
LICENSES_THIRD_PARTY
MANIFEST.in
README.md
setup.py
mRNAid.egg-info/PKG-INFO
mRNAid.egg-info/SOURCES.txt
mRNAid.egg-info/dependency_links.txt
mRNAid.egg-info/entry_points.txt
mRNAid.egg-info/requires.txt
mRNAid.egg-info/top_level.txt
mrnaid/__init__.py
mrnaid/__version__.py
mrnaid/backend/.dockerignore
mrnaid/backend/Dockerfile
mrnaid/backend/__init__.py
mrnaid/backend/common/Evaluation.py
mrnaid/backend/common/OptimizationProblems.py
mrnaid/backend/common/OptimizationTask.py
mrnaid/backend/common/__init__.py
mrnaid/backend/common/__pycache__/Evaluation.cpython-39.pyc
mrnaid/backend/common/__pycache__/OptimizationProblems.cpython-39.pyc
mrnaid/backend/common/__pycache__/OptimizationTask.cpython-39.pyc
mrnaid/backend/common/__pycache__/__init__.cpython-39.pyc
mrnaid/backend/common/constraints/Constraints.py
mrnaid/backend/common/constraints/UridineDepletion.py
mrnaid/backend/common/constraints/__init__.py
mrnaid/backend/common/constraints/__pycache__/Constraints.cpython-39.pyc
mrnaid/backend/common/constraints/__pycache__/UridineDepletion.cpython-39.pyc
mrnaid/backend/common/objectives/Codon_pair_usage.py
mrnaid/backend/common/objectives/Dinucleotide_usage.py
mrnaid/backend/common/objectives/MFE.py
mrnaid/backend/common/objectives/MFE_optimization.py
mrnaid/backend/common/objectives/Objectives.py
mrnaid/backend/common/objectives/__init__.py
mrnaid/backend/common/objectives/__pycache__/Codon_pair_usage.cpython-39.pyc
mrnaid/backend/common/objectives/__pycache__/Dinucleotide_usage.cpython-39.pyc
mrnaid/backend/common/objectives/__pycache__/MFE.cpython-39.pyc
mrnaid/backend/common/objectives/__pycache__/MFE_optimization.cpython-39.pyc
mrnaid/backend/common/objectives/__pycache__/Objectives.cpython-39.pyc
mrnaid/backend/common/objectives/data/codon_pair_usage_h_sapiens.json
mrnaid/backend/common/objectives/data/codon_pair_usage_m_musculus.json
mrnaid/backend/common/objectives/data/dinucleotides_usage_h_sapiens.json
mrnaid/backend/common/objectives/data/dinucleotides_usage_m_musculus.json
mrnaid/backend/common/utils/Datatypes.py
mrnaid/backend/common/utils/Exceptions.py
mrnaid/backend/common/utils/Logger.py
mrnaid/backend/common/utils/RequestParser.py
mrnaid/backend/common/utils/__init__.py
mrnaid/backend/common/utils/__pycache__/Datatypes.cpython-39.pyc
mrnaid/backend/common/utils/__pycache__/Exceptions.cpython-39.pyc
mrnaid/backend/common/utils/__pycache__/Logger.cpython-39.pyc
mrnaid/backend/common/utils/__pycache__/__init__.cpython-39.pyc
mrnaid/backend/docs/Backend Structure.md
mrnaid/backend/docs/Constraints.md
mrnaid/backend/docs/Objectives.md
mrnaid/backend/docs/Scoring function.md
mrnaid/backend/docs/architecture.png
mrnaid/backend/flask_app/Makefile
mrnaid/backend/flask_app/__init__.py
mrnaid/backend/flask_app/app.ini
mrnaid/backend/flask_app/requirements.txt
mrnaid/backend/flask_app/routes.py
mrnaid/backend/flask_app/tasks.py
mrnaid/backend/flask_app/__pycache__/__init__.cpython-39.pyc
mrnaid/backend/flask_app/__pycache__/tasks.cpython-39.pyc
mrnaid/backend/flask_app/logs/.gitignore
mrnaid/backend/tests/test_CAI.py
mrnaid/backend/tests/test_codon_pair.py
mrnaid/backend/tests/test_dinucleotide_frequencies.py
mrnaid/backend/tests/test_exception_empty_seq.py
mrnaid/backend/tests/test_exception_entropy_win.py
mrnaid/backend/tests/test_exception_missing_parameter.py
mrnaid/backend/tests/test_exception_no_gc.py
mrnaid/backend/tests/test_exception_num_of_seqs.py
mrnaid/backend/tests/test_exception_optimization_failure.py
mrnaid/backend/tests/test_exception_range_error.py
mrnaid/backend/tests/test_exception_seq_length.py
mrnaid/backend/tests/test_exception_species_error.py
mrnaid/backend/tests/test_exception_wrong_char_seq.py
mrnaid/backend/tests/test_mfe_optimization.py
mrnaid/backend/tests/test_optimization.py
mrnaid/backend/tests/test_organism.py
mrnaid/backend/tests/test_request_parsing.py
mrnaid/backend/tests/test_score.py
mrnaid/backend/tests/test_uridine_depletion.py
mrnaid/cli/__init__.py
mrnaid/cli/main.py
mrnaid/cli/optimize.py