Release 0.8.8
=============

* [ENH] Replace BBR by ANTs (#295, #296)
* [FIX] Singularity: user-environment leaking into container (#293)
* [ENH] Report failed cases in group report (#291)
* [FIX] Brighter anatomical --verbose-reports (#290)
* [FIX] X-flip in the mosaics (#289)
* [ENH] Show metadata in the individual report (#288)
* [ENH] Label in the cutoff threshold - fmriplot (#287)
* [ENH] PyBIDS (#286)
* [ENH] Simplify tests (#284)
* [FIX] MRIQC crashed generating csv files (#283)
* [FIX] Bug in setup.py (#281)
* [ENH] Makefile (#280)
* [FIX] Revision of IQMs (#266, #272, #279)
* [ENH] Deprecation of --nthreads, new flags (#260)
* [ENH] Improvements on plots rendering (#254, #257, #258, #267, #268, #269, #270)
* [ENH] FFT detection of spikes (#253, #272)
* [FIX] Labels and links of samples in group plots (#249)
* [ENH] Units in group plots (#242)
* [FIX] More reliable group level (#238)
* [ENH] Add --verbose-reports for fMRI (#236)
* [ENH] Migrate functional reports to html (#232)
* [ENH] Add 0.2 FD cutoff line (#231)
* [ENH] Add AFNI's outlier count to carpet plot confound charts (#230)

Release 0.8.7
=============

* [ENH] Anatomical Group reports in html (#227)
* [ENH] Add kurtosis to summary statistics (#224)
* [ENH] New report layout for fMRI, added carpetplot (#198)
* [ENH] Anatomical workflow refactor (#219).

Release 0.8.6
=============

* [FIX, CRITICAL] Do not chmod in Docker internal scripts
* [FIX] Error creating derivatives folder
* [ENH] Moved MNI spatial normalization to NIworkflows, and made robust.
* [ENH] De-coupled participant and group (reports) levels
* [ENH] Use new FD and DVARs calculations from nipype (#172)
* [ENH] Started with python3 compatibility
* [ENH] Added new M2WM measure #158
* [FIX] QI2 is skipped if background intensity is not appropriate (#147)

Release 0.8.5
=============

* [FIX] Error inverting the T1w-to-MNI warping (#146)
* [FIX] TypeError computing DVARS (#145)
* [ENH] Plot figure of fitted background chi for QI2 (#143)
* [ENH] Move skull-stripping and reorient to NIworkflows (#142)
* [FIX] mriqc crashes if no anatomical scans are found (#141)
* [DOC] Added acknowledgments to CPAC team members (#134)
* [ENH] Use absolute imports (#133)
* [FIX] VisibleDeprecationWarning (#132)
* [ENH] Provide full FD/DVARS files (#128)
* [ENH] Use MCFLIRT to compute motion parameters. AFNI's 3dvolreg now is optional (#121)
* [FIX] BIDS trees with anatomical images with different acquisition tokens (#116)
* [FIX] BIDS trees with anatomical images with several runs (#112)
* [ENH] Options for ANTs normalization: reduced test times (#124),
  and updated options (#115)

Release 0.8.4
=============

* [ENH] PDF reports now use RST templates and jinja2 (#109)
* [FIX] Single-session-multiple-run anatomical files were not correctly located (#112)

Release 0.8.3
=============

* [DOC] Added examples of the PDF reports (#107)
* [FIX] Fixed problems with Python 3 when generating reports.

Release 0.8.2
=============

* [ENH] Python 3 compatibility (#99)
* [ENH] Add JSON settings file for ANTS (#95)
* [ENH] Generate reports automatically if mriqc is run without the -S flag (#93)
* [FIX] Revised implementation of QI2 measure (#90)
* [AGAVE] Fixed docker image for agave (#89)
* [FIX] Problem when generating the air mask with dipy installed (#88)
* [ENH] One-session-one-run execution mode (#85)
* [AGAVE] Added an agave app description generator (#84)

Release 0.3.0
=============

* [ENH] Updated CircleCI and Docker to use the version 2.1.0 of ANTs
  compiled by their developers.
* [ENH] New anatomical workflows to compute the air mask (#56)

Release 0.2.0
=============

Release 0.1.0
=============

* [FIX] #55
* [ENH] Added rotation of output csv files if they exist


Release 0.0.2
=============

* [ENH] Completed migration from QAP
* [ENH] Integration with ReadTheDocs
* [ENH] Submission to PyPi


Release 0.0.1
=============

* Basic mriqc functionality
