mriqc.reports package

Submodules

mriqc.reports.generators module

Encapsulates report generation functions

mriqc.reports.generators.concat_pdf(in_files, out_file='concatenated.pdf')

Concatenate PDF list (http://stackoverflow.com/a/3444735)

mriqc.reports.generators.get_documentation(doc_type, out_file)

Generates the documentation page

mriqc.reports.generators.report_anatomical(dframe, subject=None, sc_split=False, condensed=True, out_file='anatomical.pdf')

Calls the report generator on the functional measures

mriqc.reports.generators.report_functional(dframe, subject=None, sc_split=False, condensed=True, out_file='functional.pdf')

Calls the report generator on the functional measures

mriqc.reports.generators.summary_cover(data, is_group=False, out_file=None)

Generates a cover page with subject information

mriqc.reports.generators.workflow_report(in_csv, qctype, sub_list=None, settings=None)

Creates the report

mriqc.reports.utils module

Helpers in report generation

mriqc.reports.utils.find_failed(dframe, sub_list)

Identify failed subjects

mriqc.reports.utils.image_parameters(dframe)

Generate formatted parameters for each subject, session and scan

mriqc.reports.utils.read_csv(in_csv)

Read csv file, sort and drop duplicates

Module contents

Reports module