mriqc.interfaces package¶

Submodules¶

mriqc.interfaces.qc module¶

Nipype interfaces to quality control measures

class mriqc.interfaces.qc.FramewiseDisplacement(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

Computes anatomical QC measures on the structural image given as input

input_spec¶

alias of FramewiseDisplacementInputSpec

output_spec¶

alias of FramewiseDisplacementOutputSpec

class mriqc.interfaces.qc.FramewiseDisplacementInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.qc.FramewiseDisplacementOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

class mriqc.interfaces.qc.FunctionalQC(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

Computes anatomical QC measures on the structural image given as input

input_spec¶

alias of FunctionalQCInputSpec

output_spec¶

alias of FunctionalQCOutputSpec

class mriqc.interfaces.qc.FunctionalQCInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.qc.FunctionalQCOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

class mriqc.interfaces.qc.StructuralQC(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

Computes anatomical QC measures on the structural image given as input

input_spec¶

alias of StructuralQCInputSpec

output_spec¶

alias of StructuralQCOutputSpec

class mriqc.interfaces.qc.StructuralQCInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.qc.StructuralQCOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

mriqc.interfaces.viz module¶

class mriqc.interfaces.viz.PlotFD(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

Plots the frame displacement of a dataset

input_spec¶

alias of PlotFDInputSpec

output_spec¶

alias of PlotFDOutputSpec

class mriqc.interfaces.viz.PlotFDInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.viz.PlotFDOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

class mriqc.interfaces.viz.PlotMosaic(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

Plots slices of a 3D volume into a pdf file

input_spec¶

alias of PlotMosaicInputSpec

output_spec¶

alias of PlotMosaicOutputSpec

class mriqc.interfaces.viz.PlotMosaicInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.viz.PlotMosaicOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

class mriqc.interfaces.viz.Report(**inputs)[source]¶

Bases: nipype.interfaces.base.BaseInterface

input_spec¶

alias of ReportInputSpec

output_spec¶

alias of ReportOutputSpec

class mriqc.interfaces.viz.ReportInputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.BaseInterfaceInputSpec

class mriqc.interfaces.viz.ReportOutputSpec(**kwargs)[source]¶

Bases: nipype.interfaces.base.TraitedSpec

mriqc.interfaces.viz_utils module¶

mriqc.interfaces.viz_utils.plot_all(df, groups, subject=None, figsize=(11.69, 5), strip_nsubj=10, title='Summary report')[source]¶

mriqc.interfaces.viz_utils.plot_dist(main_file, mask_file, xlabel, distribution=None, xlabel2=None, figsize=(11.7, 8.3))[source]¶

mriqc.interfaces.viz_utils.plot_fd(fd_file, title='FD plot', mean_fd_dist=None, figsize=(11.7, 8.3))[source]¶

mriqc.interfaces.viz_utils.plot_measures(df, measures, ncols=4, title='Group level report', subject=None, figsize=(8.27, 11.69))[source]¶

mriqc.interfaces.viz_utils.plot_mosaic(nifti_file, title=None, overlay_mask=None, figsize=(11.7, 8.3))[source]¶

mriqc.interfaces.viz_utils.plot_vline(cur_val, label, ax)[source]¶

Module contents¶