Metadata-Version: 2.1
Name: mOTUlizer
Version: 0.0.2
Summary: making OTUs from genomes, and stats on them. and maybe even core-genomes
Home-page: https://github.com/moritzbuck/0039_mOTUlizer/tree/dev
Author: Moritz Buck
Author-email: moritz.buck@slu.se
License: UNKNOWN
Keywords: bioinformatics clustering metagenomics microbial-genomics genomics
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6
Description-Content-Type: text/markdown

# mOTUlizer
Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin

## INSTALL

```
pip install mOTUlizer
```


## USAGE

### EASY

To make OTUs and get some stats, needs fastANI in the `PATH`, and output of checkm

```
mOTUlize.py -k checkm_output.txt  --output a_messy_json-file_with_the_output.json
```

Loads of little options if you do : `mOTUlize.py -h`

Also there is `mOTUpan.py` that can compute core genomes and pangenomes. Needs to be more debugged so try  out at own risk:

```
mOTUpan.py -h
```


