Metadata-Version: 2.1
Name: motile-plugin
Version: 0.2
Summary: Tracking with motile
Home-page: https://github.com/funkelab/motile-napari-plugin
Author: Caroline Malin-Mayor
Author-email: malinmayorc@janelia.hhmi.org
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/funkelab/motile-napari-plugin/issues
Project-URL: Documentation, https://github.com/funkelab/motile-napari-plugin#README.md
Project-URL: Source Code, https://github.com/funkelab/motile-napari-plugin
Project-URL: User Support, https://github.com/funkelab/motile-napari-plugin/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: napari[all]
Requires-Dist: numpy
Requires-Dist: magicgui
Requires-Dist: qtpy
Requires-Dist: scikit-image
Requires-Dist: motile ==0.2.1
Requires-Dist: motile-toolbox ==0.2.3
Requires-Dist: pydantic
Requires-Dist: tifffile[all]
Requires-Dist: fonticon-fontawesome6
Requires-Dist: pyqtgraph
Requires-Dist: lxml-html-clean
Provides-Extra: docs
Requires-Dist: sphinx ; extra == 'docs'
Requires-Dist: sphinx-autoapi ; extra == 'docs'
Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
Requires-Dist: myst-parser ; extra == 'docs'
Provides-Extra: testing
Requires-Dist: pytest ; extra == 'testing'
Requires-Dist: pytest-cov ; extra == 'testing'
Requires-Dist: pytest-qt ; extra == 'testing'
Requires-Dist: napari ; extra == 'testing'
Requires-Dist: pyqt5 ; extra == 'testing'

# Motile Napari Plugin

[![tests](https://github.com/funkelab/motile-napari-plugin/workflows/tests/badge.svg)](https://github.com/funkelab/motile-napari-plugin/actions)
[![codecov](https://codecov.io/gh/funkelab/motile-napari-plugin/branch/main/graph/badge.svg)](https://codecov.io/gh/funkelab/motile-napari-plugin)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/motile-plugin)](https://napari-hub.org/plugins/motile-plugin)

A plugin for tracking with [motile](https://github.com/funkelab/motile) in napari. 
Motile is a library that makes it easy to solve tracking problems using optimization 
by framing the task as an Integer Linear Program (ILP).
See the motile [documentation](https://funkelab.github.io/motile) 
for more details on the concepts and method.

----------------------------------

## Installation

This plugin depends on [motile](https://github.com/funkelab/motile), which in 
turn depends on gurobi and ilpy. These dependencies must be installed with 
conda before installing the plugin with pip.

    conda create -n motile-plugin python=3.10
    conda activate motile-plugin
    conda install -c conda-forge -c funkelab -c gurobi ilpy
    pip install git+https://github.com/funkelab/motile-napari-plugin.git

## Issues

If you encounter any problems, please 
[file an issue](https://github.com/funkelab/motile-napari-plugin/issues) 
along with a detailed description.
