CHANGELOG.rst
LICENSE
MANIFEST.in
README.rst
setup.py
tox.ini
docs/Makefile
docs/make.bat
docs/source/.DS_Store
docs/source/changelog.rst
docs/source/conf.py
docs/source/faq.rst
docs/source/help.rst
docs/source/index.rst
docs/source/install.rst
docs/source/license.rst
docs/source/quickstart.rst
docs/source/userguide.rst
docs/source/image/.DS_Store
docs/source/image/MotifScan.png
docs/source/image/motif_score.png
motifscan/__init__.py
motifscan/config.py
motifscan/exceptions.py
motifscan/logging.py
motifscan/plot.py
motifscan/scanner.py
motifscan/stats.py
motifscan.egg-info/PKG-INFO
motifscan.egg-info/SOURCES.txt
motifscan.egg-info/dependency_links.txt
motifscan.egg-info/entry_points.txt
motifscan.egg-info/not-zip-safe
motifscan.egg-info/requires.txt
motifscan.egg-info/top_level.txt
motifscan/cli/__init__.py
motifscan/cli/config.py
motifscan/cli/genome.py
motifscan/cli/main.py
motifscan/cli/motif.py
motifscan/cli/scan.py
motifscan/genome/__init__.py
motifscan/genome/annotation.py
motifscan/genome/databases.py
motifscan/io/__init__.py
motifscan/io/utils.py
motifscan/motif/__init__.py
motifscan/motif/databases.py
motifscan/motif/matrix.py
motifscan/motif/score.c
motifscan/region/__init__.py
motifscan/region/parsers.py
motifscan/region/utils.py
tests/conftest.py
tests/test_cli_config.py
tests/test_cli_genome.py
tests/test_cli_motif.py
tests/test_config.py
tests/test_genome_annotation.py
tests/test_genome_class.py
tests/test_logging.py
tests/test_motif_class.py
tests/test_motif_matrix.py
tests/test_motif_score.py
tests/test_region_class.py
tests/test_region_parsers.py
tests/test_region_utils.py
tests/test_scanner.py
tests/test_stats.py
tests/data/.DS_Store
tests/data/invalid.motifscanrc
tests/data/genomes/bad/test_bg_freq_bad1.txt
tests/data/genomes/bad/test_bg_freq_bad2.txt
tests/data/genomes/bad/test_gene_annotation_bad.txt
tests/data/genomes/test/test.fa
tests/data/genomes/test/test.fa.fai
tests/data/genomes/test/test_bg_freq.txt
tests/data/genomes/test/test_gene_annotation.txt
tests/data/motifs/bad/test_pfms_bad1.jaspar
tests/data/motifs/bad/test_pfms_bad2.jaspar
tests/data/motifs/bad/test_pfms_bad3.jaspar
tests/data/motifs/bad/test_pfms_bad4.jaspar
tests/data/motifs/bad/test_pwms_bad1.motifscan
tests/data/motifs/bad/test_pwms_bad2.motifscan
tests/data/motifs/bad/test_pwms_bad3.motifscan
tests/data/motifs/bad/test_pwms_bad4.motifscan
tests/data/motifs/bad/test_pwms_bad5.motifscan
tests/data/motifs/bad/test_pwms_bad6.motifscan
tests/data/motifs/test/test_pfms.jaspar
tests/data/motifs/test/test_pwms.motifscan
tests/data/regions/test_regions.bed
tests/data/regions/test_regions.broadPeak
tests/data/regions/test_regions.narrowPeak
tests/data/regions/test_regions_macs.xls
tests/data/regions/test_regions_macs2.xls
tests/data/regions/test_regions_manorm.xls
tests/data/regions/test_regions_summit.bed