Metadata-Version: 2.1
Name: motiffinder
Version: 0.0.2
Summary: A novel approach to motif identification in proteins
Home-page: https://github.com/carlvitzthum/motif-finder
Author: Carl Vitzthum
Author-email: carl.vitzthum@gmail.com
License: MIT
Download-URL: https://github.com/carlvitzthum/motif-finder/tarball/0.0.2
Keywords: bioinformatics,genomics,proteomics,motif,protein
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
Requires-Dist: biopython (<=1.74)
Requires-Dist: numpy (<=1.16.3,>=1.10.1)
Requires-Dist: importlib-resources

# motif-finder
A novel approach to motif identification in proteins

### Important

This code is in BETA and features may change without notice.

### Usage

Provide a text query file, which is required. If not using manual motifs, also provide one more motif files using the `-m` flag to generate motifs dynamically.

```
pip install motiffinder
# main program
motiffinder <query file> -m <optional motif file>

# for help
motiffind -h

# for version
motiffinder -v
```

Or, clone this repository and set up with:

```
pip install -r requirements.text
python -m motiffinder <query file> -m <optional motif file>

# alternately, use setup.py to get the motiffinder package
python setup.py install
```

### Contributors

Written by Carl Vitzthum and Prof. Andrea Tilden


