LICENSE
README.rst
pyproject.toml
morsaik/__init__.py
morsaik.egg-info/PKG-INFO
morsaik.egg-info/SOURCES.txt
morsaik.egg-info/dependency_links.txt
morsaik.egg-info/requires.txt
morsaik.egg-info/top_level.txt
morsaik/domains/__init__.py
morsaik/domains/extentive_motif_breakage_space.py
morsaik/domains/hamming_space.py
morsaik/domains/motif_breakage_space.py
morsaik/domains/motif_hyphen_space.py
morsaik/domains/motif_production_space.py
morsaik/domains/motif_space.py
morsaik/domains/time_space.py
morsaik/domains/trajectory_space.py
morsaik/get/__init__.py
morsaik/get/alphabet.py
morsaik/get/motif_breakage_rate_constants.py
morsaik/get/motif_production_rate_constants.py
morsaik/get/strand_length_distribution.py
morsaik/get/strand_motifs_productions_trajectory.py
morsaik/get/strand_motifs_productions_trajectory_ensemble.py
morsaik/get/strand_motifs_trajectory.py
morsaik/get/strand_motifs_trajectory_ensemble.py
morsaik/get/strand_reactor_parameters.py
morsaik/infer/__init__.py
morsaik/infer/_rates_utils.py
morsaik/infer/_smooth_rate_clipping.py
morsaik/infer/collisions.py
morsaik/infer/dissociation_constant.py
morsaik/infer/effective_ligation_rates_from_parameters.py
morsaik/infer/fourmer_breakage_rates.py
morsaik/infer/fourmer_mass_correction.py
morsaik/infer/fourmer_production_rates.py
morsaik/infer/fourmer_trajectory_from_rate_constants.py
morsaik/infer/hybridization_energy.py
morsaik/infer/mean_length.py
morsaik/infer/motif_breakage_rate_constants_from_strand_reactor_parameters.py
morsaik/infer/motif_concentration_trajectory.py
morsaik/infer/motif_concentration_vector.py
morsaik/infer/motif_production_rate_constants_extension_matrix.py
morsaik/infer/motif_production_rate_constants_from_strand_reactor_parameters.py
morsaik/infer/motif_production_rates.py
morsaik/infer/motif_production_transition_kernel.py
morsaik/infer/onset.py
morsaik/infer/total_mass.py
morsaik/infer/zebraness.py
morsaik/obj/__init__.py
morsaik/obj/motif_breakage_trajectory.py
morsaik/obj/motif_breakage_trajectory_ensemble.py
morsaik/obj/motif_breakage_vector.py
morsaik/obj/motif_concentration_vector.py
morsaik/obj/motif_number_vector.py
morsaik/obj/motif_production_trajectory.py
morsaik/obj/motif_production_trajectory_ensemble.py
morsaik/obj/motif_production_vector.py
morsaik/obj/motif_trajectory.py
morsaik/obj/motif_trajectory_ensemble.py
morsaik/obj/motif_vector.py
morsaik/obj/times_vector.py
morsaik/obj/units.py
morsaik/plot/__init__.py
morsaik/plot/colors.py
morsaik/plot/entropy.py
morsaik/plot/motif_concentrations.py
morsaik/plot/motif_production_rates.py
morsaik/plot/motif_trajectory_analysis.py
morsaik/plot/zebraness.py
morsaik/read/__init__.py
morsaik/read/config.py
morsaik/read/strand_length_distribution.py
morsaik/read/strand_motifs_productions_trajectory.py
morsaik/read/strand_motifs_productions_trajectory_ensemble.py
morsaik/read/strand_motifs_trajectory.py
morsaik/read/strand_motifs_trajectory_ensemble.py
morsaik/read/strand_reactor_nucleotides.py
morsaik/read/strand_reactor_parameters.py
morsaik/utils/__init__.py
morsaik/utils/logc.py
morsaik/utils/manage_strand_reactor_files.py
morsaik/utils/save.py
morsaik/utils/split_config.py
morsaik/utils/transform_vectors_to_fields.py
test/test_init.py
test/test_motif_breakage_trajectory.py
test/test_motif_breakage_trajectory_ensemble.py
test/test_motif_breakage_vector.py
test/test_motif_concentration_vector.py
test/test_motif_number_vector.py
test/test_motif_production_trajectory.py
test/test_motif_production_trajectory_ensemble.py
test/test_motif_production_vector.py
test/test_motif_trajectory.py
test/test_motif_trajectory_ensemble.py
test/test_motif_vector.py
test/test_times_vector.py
test/test_units.py