from . import domains
from . import read
from . import utils
from . import get
from . import infer
from . import plot

from .obj.units import Unit, make_unit, transform_unit_to_dict, transform_dict_to_unit, transform_unit_to_str

from .obj.motif_vector import MotifVector, _create_empty_motif_vector_dct
from .obj.motif_vector import add_zebra_fluctuation_to_motif_vector
from .obj.motif_vector import convert_homogeneous_dimers_to_zebra_dimers, convert_dimers_to_tetramers
from .obj.motif_vector import isinstance_motifvector, are_compatible_motif_vectors
from .obj.motif_vector import _transform_sequence_array_to_motif_array
from .obj.motif_vector import _motif_vector_as_array, _array_to_motif_vector_dct
from .obj.motif_vector import _motif_indices_in_motifs_array
from .obj.motif_vector import save_motif_vector, load_motif_vector

from .obj.motif_number_vector import MotifNumberVector
from .obj.motif_concentration_vector import MotifConcentrationVector

from .obj.motif_trajectory import MotifTrajectory
from .obj.motif_trajectory import isinstance_motiftrajectory, are_compatible_motif_trajectories
from .obj.motif_trajectory import save_motif_trajectory, load_motif_trajectory
from .obj.motif_trajectory import extract_initial_motif_vector_from_motif_trajectory
from .obj.motif_trajectory import _motif_trajectory_as_array
from .obj.motif_trajectory import _array_to_motif_trajectory

from .obj.times_vector import TimesVector, are_compatible_times_vectors

from .obj.motif_trajectory_ensemble import MotifTrajectoryEnsemble
from .obj.motif_trajectory_ensemble import isinstance_motiftrajectoryensemble, are_compatible_motif_trajectory_ensembles
from .obj.motif_trajectory_ensemble import save_motif_trajectory_ensemble, load_motif_trajectory_ensemble

from .obj.motif_production_vector import MotifProductionVector, _create_empty_motif_production_dict
from .obj.motif_production_vector import (_motif_production_vector_as_array, _array_to_motif_production_vector)
from .obj.motif_production_vector import _motif_production_array_shape
from .obj.motif_production_vector import save_motif_production_vector, load_motif_production_vector

from .obj.motif_production_trajectory import MotifProductionTrajectory
from .obj.motif_production_trajectory import isinstance_motifproductiontrajectory, are_compatible_motif_production_trajectories
from .obj.motif_production_trajectory import _motif_production_trajectory_as_array
from .obj.motif_production_trajectory import save_motif_production_trajectory, load_motif_production_trajectory

from .obj.motif_production_trajectory_ensemble import MotifProductionTrajectoryEnsemble
from .obj.motif_production_trajectory_ensemble import isinstance_motifproductiontrajectoryensemble
from .obj.motif_production_trajectory_ensemble import are_compatible_motif_production_trajectory_ensembles
from .obj.motif_production_trajectory_ensemble import save_motif_production_trajectory_ensemble, load_motif_production_trajectory_ensemble

from .obj.motif_breakage_vector import MotifBreakageVector, isinstance_motifbreakagevector
from .obj.motif_breakage_vector import _array_to_motif_breakage_vector, _create_empty_motif_breakage_dct
from .obj.motif_breakage_trajectory import MotifBreakageTrajectory
from .obj.motif_breakage_trajectory import isinstance_motifbreakagetrajectory, are_compatible_motif_breakage_trajectories
from .obj.motif_breakage_trajectory_ensemble import MotifBreakageTrajectoryEnsemble, isinstance_motifbreakagetrajectoryensemble, are_compatible_motif_breakage_trajectory_ensembles
