README.md
setup.py
moped/__init__.py
moped.egg-info/PKG-INFO
moped.egg-info/SOURCES.txt
moped.egg-info/dependency_links.txt
moped.egg-info/not-zip-safe
moped.egg-info/requires.txt
moped.egg-info/top_level.txt
moped/core/__init__.py
moped/core/compound.py
moped/core/constants.py
moped/core/model.py
moped/core/reaction.py
moped/databases/__init__.py
moped/databases/cyc.py
moped/topological/__init__.py
moped/topological/blast.py
moped/topological/gapfilling.py
moped/topological/scope.py
moped/topological/treesearch.py
moped/utils/__init__.py
moped/utils/utils.py
tests/__init__.py
tests/core/__init__.py
tests/core/test_cobra_interface.py
tests/core/test_compound.py
tests/core/test_io.py
tests/core/test_model.py
tests/core/test_modelbase_interface.py
tests/core/test_reaction.py
tests/core/test_sbml_interface.py
tests/databases/__init__.py
tests/databases/test_cycparser.py
tests/databases/test_cycparser_full.py
tests/topological/__init__.py
tests/topological/test_blast.py
tests/topological/test_gapfilling.py
tests/topological/test_scope.py
tests/topological/test_treesearch.py