Metadata-Version: 2.1
Name: MOMIA2
Version: 0.0.2.dev3
Summary: Mycobacteria-optimized microscopy image analysis version 2 (sort of)
Author: jz-rolling
Author-email: juzhu@hsph.harvard.edu, zhujh@im.ac.cn
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy==1.25.2
Requires-Dist: trackpy==0.6.1
Requires-Dist: pandas==2.1.1
Requires-Dist: scikit-image==0.21.0
Requires-Dist: scikit-learn==1.3.1
Requires-Dist: scipy==1.11.3
Requires-Dist: matplotlib>=3.7
Requires-Dist: networkx==3.1
Requires-Dist: numba==0.58.0
Requires-Dist: tifffile==2023.9.26
Requires-Dist: nd2reader==3.3.0
Requires-Dist: networkx==3.1
Requires-Dist: seaborn==0.13.0
Requires-Dist: opencv-python==4.8.1.78
Requires-Dist: Pillow==10.0.1
Requires-Dist: PyWavelets==1.4.1
Requires-Dist: PyYAML==6.0.1
Requires-Dist: read-roi==1.6.0
Requires-Dist: tqdm==4.66.1

## MOMIA2 (Mycobacteria-optimized microscopy image analysis v.2) ##

### Installation guide: ###

Install miniconda and create a new conda environment
```
conda create --name myenv python=3.11
```

Need to first install pyqt5 from conda (pip doesn't always work)
```
conda install -c anaconda pyqt
```

To install **momia2** from pip:
```
pip install momia2
```

To install the most up-to-date version in development, run:
```
pip install git+https://github.com/jzrolling/CleanSpace.git
```




