"""
The `molalchemy.rdkit.functions` module provides collections of RDKit PostgreSQL functions for molecular structure search and analysis.

These function classes wrap RDKit PostgreSQL functions, enabling various chemical structure operations including substructure search, exact matching, similarity search, fingerprint calculations, and chemical property calculations directly from SQLAlchemy queries.
"""

from .general import (
    add,
    all_values_gt,
    all_values_lt,
    atompair_fp,
    atompairbv_fp,
    avalon_fp,
    bfp_from_binary_text,
    bfp_le,
    bfp_to_binary_text,
    dice_dist,
    dice_sml,
    dice_sml_op,
    featmorgan_fp,
    featmorganbv_fp,
    fmcs,
    fmcs_smiles,
    is_valid_ctab,
    is_valid_mol_pkl,
    is_valid_smarts,
    is_valid_smiles,
    layered_fp,
    maccs_fp,
    mol_adjust_query_properties,
    mol_amw,
    mol_chi0n,
    mol_chi0v,
    mol_chi1n,
    mol_chi1v,
    mol_chi2n,
    mol_chi2v,
    mol_chi3n,
    mol_chi3v,
    mol_chi4n,
    mol_chi4v,
    mol_exactmw,
    mol_formula,
    mol_fractioncsp3,
    mol_from_ctab,
    mol_from_json,
    mol_from_pkl,
    mol_from_smiles,
    mol_hallkieralpha,
    mol_has_substructure,
    mol_hba,
    mol_hbd,
    mol_inchi,
    mol_inchikey,
    mol_kappa1,
    mol_kappa2,
    mol_kappa3,
    mol_labuteasa,
    mol_logp,
    mol_murckoscaffold,
    mol_nm_hash,
    mol_numaliphaticcarbocycles,
    mol_numaliphaticheterocycles,
    mol_numaliphaticrings,
    mol_numamidebonds,
    mol_numaromaticcarbocycles,
    mol_numaromaticheterocycles,
    mol_numaromaticrings,
    mol_numatoms,
    mol_numbridgeheadatoms,
    mol_numheavyatoms,
    mol_numheteroatoms,
    mol_numheterocycles,
    mol_numrings,
    mol_numrotatablebonds,
    mol_numsaturatedcarbocycles,
    mol_numsaturatedheterocycles,
    mol_numsaturatedrings,
    mol_numspiroatoms,
    mol_phi,
    mol_send,
    mol_to_ctab,
    mol_to_cxsmarts,
    mol_to_cxsmiles,
    mol_to_json,
    mol_to_pkl,
    mol_to_smarts,
    mol_to_smiles,
    mol_to_svg,
    mol_to_v3kctab,
    mol_to_xqmol,
    mol_tpsa,
    morgan_fp,
    morganbv_fp,
    qmol_from_ctab,
    qmol_from_json,
    qmol_from_smarts,
    qmol_from_smiles,
    qmol_send,
    rdkit_fp,
    rdkit_toolkit_version,
    rdkit_version,
    reaction_difference_fp,
    reaction_from_ctab,
    reaction_from_smarts,
    reaction_from_smiles,
    reaction_numagents,
    reaction_numproducts,
    reaction_numreactants,
    reaction_send,
    reaction_structural_bfp,
    reaction_to_ctab,
    reaction_to_smarts,
    reaction_to_smiles,
    reaction_to_svg,
    rsubstruct,
    rsubstruct_chiral,
    rsubstruct_query,
    rsubstructfp,
    rxn_has_smarts,
    size,
    substruct,
    substruct_chiral,
    substruct_count,
    substruct_count_chiral,
    substruct_query,
    substructfp,
    subtract,
    tanimoto_dist,
    tanimoto_sml,
    torsion_fp,
    torsionbv_fp,
    tversky_sml,
    xqmol_send,
)
from .internal import (
    bfp_cmp,
    bfp_eq,
    bfp_ge,
    bfp_gt,
    bfp_in,
    bfp_lt,
    bfp_ne,
    bfp_out,
    fmcs_smiles_transition,
    mol_cmp,
    mol_eq,
    mol_ge,
    mol_gt,
    mol_in,
    mol_le,
    mol_lt,
    mol_ne,
    mol_out,
    qmol_in,
    qmol_out,
    reaction_eq,
    reaction_in,
    reaction_ne,
    reaction_out,
    sfp_cmp,
    sfp_eq,
    sfp_ge,
    sfp_gt,
    sfp_in,
    sfp_le,
    sfp_lt,
    sfp_ne,
    sfp_out,
    tanimoto_sml_op,
    xqmol_in,
    xqmol_out,
)

__all__ = [
    "add",
    "all_values_gt",
    "all_values_lt",
    "atompair_fp",
    "atompairbv_fp",
    "avalon_fp",
    "bfp_cmp",
    "bfp_eq",
    "bfp_from_binary_text",
    "bfp_ge",
    "bfp_gt",
    "bfp_in",
    "bfp_le",
    "bfp_lt",
    "bfp_ne",
    "bfp_out",
    "bfp_to_binary_text",
    "dice_dist",
    "dice_sml",
    "dice_sml_op",
    "featmorgan_fp",
    "featmorganbv_fp",
    "fmcs",
    "fmcs_smiles",
    "fmcs_smiles_transition",
    "is_valid_ctab",
    "is_valid_mol_pkl",
    "is_valid_smarts",
    "is_valid_smiles",
    "layered_fp",
    "maccs_fp",
    "mol_adjust_query_properties",
    "mol_amw",
    "mol_chi0n",
    "mol_chi0v",
    "mol_chi1n",
    "mol_chi1v",
    "mol_chi2n",
    "mol_chi2v",
    "mol_chi3n",
    "mol_chi3v",
    "mol_chi4n",
    "mol_chi4v",
    "mol_cmp",
    "mol_eq",
    "mol_exactmw",
    "mol_formula",
    "mol_fractioncsp3",
    "mol_from_ctab",
    "mol_from_json",
    "mol_from_pkl",
    "mol_from_smiles",
    "mol_ge",
    "mol_gt",
    "mol_hallkieralpha",
    "mol_has_substructure",
    "mol_hba",
    "mol_hbd",
    "mol_in",
    "mol_inchi",
    "mol_inchikey",
    "mol_kappa1",
    "mol_kappa2",
    "mol_kappa3",
    "mol_labuteasa",
    "mol_le",
    "mol_logp",
    "mol_lt",
    "mol_murckoscaffold",
    "mol_ne",
    "mol_nm_hash",
    "mol_numaliphaticcarbocycles",
    "mol_numaliphaticheterocycles",
    "mol_numaliphaticrings",
    "mol_numamidebonds",
    "mol_numaromaticcarbocycles",
    "mol_numaromaticheterocycles",
    "mol_numaromaticrings",
    "mol_numatoms",
    "mol_numbridgeheadatoms",
    "mol_numheavyatoms",
    "mol_numheteroatoms",
    "mol_numheterocycles",
    "mol_numrings",
    "mol_numrotatablebonds",
    "mol_numsaturatedcarbocycles",
    "mol_numsaturatedheterocycles",
    "mol_numsaturatedrings",
    "mol_numspiroatoms",
    "mol_out",
    "mol_phi",
    "mol_send",
    "mol_to_ctab",
    "mol_to_cxsmarts",
    "mol_to_cxsmiles",
    "mol_to_json",
    "mol_to_pkl",
    "mol_to_smarts",
    "mol_to_smiles",
    "mol_to_svg",
    "mol_to_v3kctab",
    "mol_to_xqmol",
    "mol_tpsa",
    "morgan_fp",
    "morganbv_fp",
    "qmol_from_ctab",
    "qmol_from_json",
    "qmol_from_smarts",
    "qmol_from_smiles",
    "qmol_in",
    "qmol_out",
    "qmol_send",
    "rdkit_fp",
    "rdkit_toolkit_version",
    "rdkit_version",
    "reaction_difference_fp",
    "reaction_eq",
    "reaction_from_ctab",
    "reaction_from_smarts",
    "reaction_from_smiles",
    "reaction_in",
    "reaction_ne",
    "reaction_numagents",
    "reaction_numproducts",
    "reaction_numreactants",
    "reaction_out",
    "reaction_send",
    "reaction_structural_bfp",
    "reaction_to_ctab",
    "reaction_to_smarts",
    "reaction_to_smiles",
    "reaction_to_svg",
    "rsubstruct",
    "rsubstruct_chiral",
    "rsubstruct_query",
    "rsubstructfp",
    "rxn_has_smarts",
    "sfp_cmp",
    "sfp_eq",
    "sfp_ge",
    "sfp_gt",
    "sfp_in",
    "sfp_le",
    "sfp_lt",
    "sfp_ne",
    "sfp_out",
    "size",
    "substruct",
    "substruct_chiral",
    "substruct_count",
    "substruct_count_chiral",
    "substruct_query",
    "substructfp",
    "subtract",
    "tanimoto_dist",
    "tanimoto_sml",
    "tanimoto_sml_op",
    "torsion_fp",
    "torsionbv_fp",
    "tversky_sml",
    "xqmol_in",
    "xqmol_out",
    "xqmol_send",
]
