"""
Normalization implementations for the mokume package.

This module provides implementations for feature-level, peptide-level,
and protein-level normalization.
"""

from mokume.normalization.feature import (
    normalize_runs,
    normalize_sample,
    normalize_replicates,
)
from mokume.normalization.peptide import (
    peptide_normalization,
    analyse_sdrf,
    remove_contaminants_entrapments_decoys,
    remove_protein_by_ids,
    Feature,
)

__all__ = [
    # Feature normalization
    "normalize_runs",
    "normalize_sample",
    "normalize_replicates",
    # Peptide normalization
    "peptide_normalization",
    "analyse_sdrf",
    "remove_contaminants_entrapments_decoys",
    "remove_protein_by_ids",
    "Feature",
]
