.gitignore
LICENSE
README.md
for_local_use.py
requirements.txt
setup.py
test_script.py
useful_parameters.json
.github/workflows/python-app.yml
example_models/application_models/AB_2CD.py
example_models/application_models/AND_gate.py
example_models/application_models/CRISPR_Oscillator.py
example_models/application_models/For_The_Trees.py
example_models/application_models/NOR_gate.py
example_models/application_models/donor_receptor.py
example_models/application_models/oscillator.py
example_models/application_models/random_walk.py
example_models/application_models/simple_repressor.py
example_models/application_models/toggle_switch.py
example_models/tutorial_models/01_Getting_Started.py
example_models/tutorial_models/02_Reaction_Inheritance.py
example_models/tutorial_models/02_Reaction_Inheritance_Model.txt
example_models/tutorial_models/03_Queries.py
example_models/tutorial_models/03_Queries.txt
example_models/tutorial_models/04_Characteristic_Restriction.py
example_models/tutorial_models/05_C_Query.py
example_models/tutorial_models/06_Round_Robin.py
example_models/tutorial_models/07_Rates.py
example_models/tutorial_models/08_Units.py
example_models/tutorial_models/09_Count_Assignment.py
example_models/tutorial_models/09_Count_Assignment.txt
example_models/tutorial_models/10_Species_Loop.py
example_models/tutorial_models/11_Results.py
example_models/tutorial_models/12_Hierarchical_plot.py
example_models/tutorial_models/13_Born_Species.py
images/img.png
mobspy/__init__.py
mobspy/_version.py
mobspy/simulation.py
mobspy.egg-info/PKG-INFO
mobspy.egg-info/SOURCES.txt
mobspy.egg-info/dependency_links.txt
mobspy.egg-info/requires.txt
mobspy.egg-info/top_level.txt
mobspy/data_handler/__init__.py
mobspy/data_handler/process_result_data.py
mobspy/data_handler/time_series_object.py
mobspy/modules/__init__.py
mobspy/modules/event_functions.py
mobspy/modules/function_rate_code.py
mobspy/modules/logic_operator_objects.py
mobspy/modules/meta_class.py
mobspy/modules/meta_class_utils.py
mobspy/modules/order_operators.py
mobspy/modules/reaction_construction_nb.py
mobspy/modules/set_counts_module.py
mobspy/modules/species_string_generator.py
mobspy/modules/unit_handler.py
mobspy/parameter_scripts/__init__.py
mobspy/parameter_scripts/parameter_reader.py
mobspy/parameters/README.md
mobspy/parameters/__init__.py
mobspy/parameters/default_reader.py
mobspy/parameters/example_reader.py
mobspy/plot_params/__init__.py
mobspy/plot_params/default_plot_reader.py
mobspy/plot_params/example_plot_reader.py
mobspy/plot_scripts/__init__.py
mobspy/plot_scripts/default_plots.py
mobspy/plot_scripts/hierarchical_plot.py
mobspy/plot_scripts/process_plot_data.py
mobspy/plot_scripts/statistics_calculations.py
mobspy/sbml_simulator/SBMLWriter.py
mobspy/sbml_simulator/__init__.py
mobspy/sbml_simulator/builder.py
mobspy/sbml_simulator/run.py
mobspy/simulation_logging/__init__.py
mobspy/simulation_logging/log_scripts.py
test_tools/model_1.txt
test_tools/model_10.txt
test_tools/model_11.txt
test_tools/model_12.txt
test_tools/model_13.txt
test_tools/model_14.txt
test_tools/model_15.txt
test_tools/model_16.txt
test_tools/model_17.txt
test_tools/model_18.txt
test_tools/model_19.txt
test_tools/model_2.txt
test_tools/model_20.txt
test_tools/model_21.txt
test_tools/model_22.txt
test_tools/model_23.txt
test_tools/model_24.txt
test_tools/model_25.txt
test_tools/model_26.txt
test_tools/model_27.txt
test_tools/model_3.txt
test_tools/model_4.txt
test_tools/model_5.txt
test_tools/model_6.txt
test_tools/model_7.txt
test_tools/model_8.txt
test_tools/model_9.txt