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% References in addition to what is included with MNE-Python.
% references.bib is a direct copy from MNE-Python.
% references-nirs.bib is papers not included in the above.

@article{luke2023bids,
  title={fNIRS-BIDS, the Brain Imaging Data Structure Extended to Functional Near-Infrared Spectroscopy},
  author={Luke, Robert and Robert Oostenveld and Helena Cocks and Guiomar Niso and Maureen Shader and Felipe Orihuela-Espina and Hamish Innes-Brown and Stephen Tucker and David Boas and Remi Gau and Taylor Salo and Stefan Appelhoff and Christopher Markiewicz and David McAlpine and Luca Pollonini},
  journal={OSF Preprints},
  year={2023},
  doi={10.31219/osf.io/7nmcp}
}

@article{abraham2014machine,
  title={Machine learning for neuroimaging with scikit-learn},
  author={Abraham, Alexandre and Pedregosa, Fabian and Eickenberg, Michael and Gervais, Philippe and Mueller, Andreas and Kossaifi, Jean and Gramfort, Alexandre and Thirion, Bertrand and Varoquaux, Ga{\"e}l},
  journal={Frontiers in neuroinformatics},
  volume={8},
  pages={14},
  year={2014},
  publisher={Frontiers},
  doi={10.3389/fninf.2014.00014}
}

@article{fabbri2004optical,
  title={Optical measurements of absorption changes in two-layered diffusive media},
  author={Fabbri, Francesco and Sassaroli, Angelo and Henry, Michael E and Fantini, Sergio},
  journal={Physics in Medicine \& Biology},
  volume={49},
  number={7},
  pages={1183},
  year={2004},
  publisher={IOP Publishing}
}

@article{saager2005direct,
  title={Direct characterization and removal of interfering absorption trends in two-layer turbid media},
  author={Saager, Rolf B and Berger, Andrew J},
  journal={JOSA A},
  volume={22},
  number={9},
  pages={1874--1882},
  year={2005},
  publisher={Optical Society of America}
}

@article{scholkmann2014measuring,
  title={Measuring tissue hemodynamics and oxygenation by continuous-wave functional near-infrared spectroscopy—how robust are the different calculation methods against movement artifacts?},
  author={Scholkmann, Felix and Metz, Andreas Jaakko and Wolf, Martin},
  journal={Physiological measurement},
  volume={35},
  number={4},
  pages={717},
  year={2014},
  publisher={IOP Publishing}
}

@article{cui2010functional,
  title={Functional near infrared spectroscopy (NIRS) signal improvement based on negative correlation between oxygenated and deoxygenated hemoglobin dynamics},
  author={Cui, Xu and Bray, Signe and Reiss, Allan L},
  journal={Neuroimage},
  volume={49},
  number={4},
  pages={3039--3046},
  year={2010},
  publisher={Elsevier}
}

@article{donoghue2020parameterizing,
  title={Parameterizing neural power spectra into periodic and aperiodic components},
  author={Donoghue, Thomas and Haller, Matar and Peterson, Erik J and Varma, Paroma and Sebastian, Priyadarshini and Gao, Richard and Noto, Torben and Lara, Antonio H and Wallis, Joni D and Knight, Robert T and others},
  journal={Nature neuroscience},
  volume={23},
  number={12},
  pages={1655--1665},
  year={2020},
  publisher={Nature Publishing Group}
}

@article{luke2021characterization,
  title={Characterization of Mayer-wave oscillations in functional near-infrared spectroscopy using a physiologically informed model of the neural power spectra},
  author={Luke, Robert and Shader, Maureen and McAlpine, David},
  journal={Neurophotonics},
  volume={8},
  number={4},
  pages={041001--041001},
  year={2021},
  publisher={Society of Photo-Optical Instrumentation Engineers},
  doi={10.1117/1.NPh.8.4.041001}
}

@article{morais2018fnirs,
  title={fNIRS optodes’ location decider (fOLD): a toolbox for probe arrangement guided by brain regions-of-interest},
  author={Morais, Guilherme Augusto Zimeo and Balardin, Joana Bisol and Sato, Jo{\~a}o Ricardo},
  journal={Scientific reports},
  volume={8},
  number={1},
  pages={1--11},
  year={2018},
  publisher={Nature Publishing Group}
}

@article{luke2021analysis,
  title={Analysis methods for measuring passive auditory fNIRS responses generated by a block-design paradigm},
  author={Luke, Robert and Larson, Eric and Shader, Maureen J and Innes-Brown, Hamish and Van Yper, Lindsey and Lee, Adrian KC and Sowman, Paul F and McAlpine, David},
  journal={Neurophotonics},
  volume={8},
  number={2},
  pages={025008},
  year={2021},
  publisher={International Society for Optics and Photonics},
  doi={10.1117/1.NPh.8.2.025008}
}

@article{Luke_fNIRS_Finger_Tapping_2021,
author = {Luke, Robert and McAlpine, David},
journal={GitHub},
doi = {10.5281/zenodo.5529797},
month = {9},
title = {{fNIRS Finger Tapping Data in BIDS Format}},
version = {v0.0.1},
year = {2021}
}

@article{shader2021use,
  title={The use of broad vs restricted regions of interest in functional near-infrared spectroscopy for measuring cortical activation to auditory-only and visual-only speech},
  author={Shader, Maureen J and Luke, Robert and Gouailhardou, Nathalie and McKay, Colette M},
  journal={Hearing Research},
  volume={406},
  pages={108256},
  year={2021},
  publisher={Elsevier},
  doi={10.1016/j.heares.2021.108256}
}

@article{novi2020integration,
  title={Integration of spatial information increases reproducibility in functional near-infrared spectroscopy},
  author={Novi, Sergio Luiz and Forero, Edwin Johan and Silva, Jose Angel Ivan Rubianes and de Souza, Nicolas Gabriel SR and Martins, Giovani Grisotti and Quiroga, Andres and Wu, Shin-Ting and Mesquita, Rickson C},
  journal={Frontiers in neuroscience},
  volume={14},
  year={2020},
  publisher={Frontiers Media SA},
  doi={10.3389/fnins.2020.00746}
}

@article {Luke2021.11.19.469225,
	author = {Luke, Robert and Shader, Maureen and Larson, Eric and Gramfort, Alexandre and Lee, Adrian KC and McAlpine, David},
	title = {Oxygenated hemoglobin signal provides greater predictive performance of experimental condition than de-oxygenated},
	year = {2021},
	doi = {10.1101/2021.11.19.469225},
	publisher = {Cold Spring Harbor Laboratory},
	journal = {bioRxiv}
}

