Metadata-Version: 1.1
Name: mminte
Version: 0.2.2
Summary: Microbial Metabolic interactions
Home-page: https://github.com/mendessoares/mminte
Author: Helena Mendes-Soares, Michael Mundy, Luis Mendes Soares, Nicholas Chia
Author-email: microbialmetabolicinteractions@gmail.com
License: BSD
Download-URL: https://pypi.python.org/pypi/mminte
Description: Microbial Metabolic Interactions
        ================================
        
        **MMinte** (pronounced /‘minti/) is a set of widgets that allows you to explore
        the pairwise interactions (positive or negative) that occur in a microbial
        community. From an association network and 16S rDNA sequence data, **MMinte**
        identifies corresponding genomes, reconstructs metabolic models, estimates
        growth under specific metabolic conditions, analyzes pairwise interactions,
        assigns interaction types to network links, and generates the corresponding
        network of interactions.
        
        Installation
        ------------
        
        Use pip to install **MMinte** from `PyPI <https://pypi.python.org/pypi/mminte>`_
        (we recommend doing this inside a `virtual environment
        <http://docs.python-guide.org/en/latest/dev/virtualenvs/>`_)::
        
            pip install mminte
        
        How to cite MMinte
        ------------------
        
        If you use **MMinte** for an analysis, please cite this paper:
        `MMinte: an application for predicting metabolic interactions among the microbial
        species in a community <http://dx.doi.org/doi:10.1186/s12859-016-1230-3>`_
        
        References
        ----------
        
        The models provided in the mminte/test/data folder are from `Anoxic Conditions Promote
        Species-Specific Mutualism between Gut Microbes In Silico <http://dx.doi.org/doi:10.1128/AEM.00101-15>`_.
        
        The 16S sequences present in the database were provided by Maulik Shukla on
        the 3rd of November of 2015.
Keywords: metabolism biology optimization flux balance analysis fba
Platform: GNU/Linux
Platform: Mac OS X >= 10.7
Platform: Microsoft Windows >= 7
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
