from .common import (apply_transform, bond_type_dict, canonicalise,
                     elements_decoder, set_conformer_positions)
from .config import (ATOM_DECODER, CONTEXT_NORMS, DIMENSION, MAX_FRAG_SIZE,
                     MAX_N_NODES, MIN_FRAG_SIZE, MIN_N_NODES, NUM_BOND_TYPES)
from .mol_split import extract_fragment, split_molecule_size_constrained
from .mol_utils import (align_mol_to_principal_frame, concat_masked_and_pad,
                        coord_to_pf_batched, get_context_shape,
                        get_moment_of_inertia_tensor, ifm_get_xh_from_fragment,
                        ifm_prepare_fragments_for_merge,
                        ifm_prepare_gen_fragment_context,
                        inverse_coord_transform, prepare_adj_mat_seer_input,
                        prepare_edm_input, prepare_fragment, prepare_masks,
                        redefine_bonds, samples_to_rdkit_mol)
from .standardizer import standardize_mol

__all__ = [
    "align_mol_to_principal_frame",
    "extract_fragment",
    "samples_to_rdkit_mol",
    "set_conformer_positions",
    "split_molecule_size_constrained",
    "apply_transform",
    "bond_type_dict",
    "canonicalise",
    "elements_decoder",
    "coord_to_pf_batched",
    "concat_masked_and_pad",
    "get_context_shape",
    "get_moment_of_inertia_tensor",
    "prepare_adj_mat_seer_input",
    "prepare_edm_input",
    "prepare_fragment",
    "prepare_masks",
    "ifm_prepare_gen_fragment_context",
    "ifm_prepare_fragments_for_merge",
    "ifm_get_xh_from_fragment",
    "inverse_coord_transform",
    "redefine_bonds",
    "standardize_mol",
    "DIMENSION",
    "NUM_BOND_TYPES",
    "MIN_N_NODES",
    "MAX_N_NODES",
    "CONTEXT_NORMS",
    "ATOM_DECODER",
    "MIN_FRAG_SIZE",
    "MAX_FRAG_SIZE",
]
