#!/usr/bin/env python3
"""
Mity: a sensitive variant analysis pipeline optimised for WGS data

Authors: Clare Puttick, Mark Cowley
License: Open source for research use: see LICENSE.txt
"""

import logging
from mitylib import commands
from mitylib import util
import sys

assert sys.version_info >= (3, 5, 3)

if __name__ == '__main__':
    # logging.basicConfig(level=logging.INFO, format="%(message)s")
    logging.basicConfig(level=logging.DEBUG, format="%(message)s")

    util.check_dependencies()

    args = commands.parse_args()
    if len(vars(args)) == 0:
        logging.info("usage: mity -h")
    else:
        args.func(args)
