LICENSE
MANIFEST.in
README.md
setup.py
mirtop/__init__.py
mirtop/command_line.py
mirtop/install.py
mirtop/version.py
mirtop.egg-info/PKG-INFO
mirtop.egg-info/SOURCES.txt
mirtop.egg-info/dependency_links.txt
mirtop.egg-info/entry_points.txt
mirtop.egg-info/not-zip-safe
mirtop.egg-info/top_level.txt
mirtop/bam/__init__.py
mirtop/bam/bam.py
mirtop/bam/filter.py
mirtop/exporter/__init__.py
mirtop/exporter/isomirs.py
mirtop/gff/__init__.py
mirtop/gff/body.py
mirtop/gff/check.py
mirtop/gff/compare.py
mirtop/gff/convert.py
mirtop/gff/header.py
mirtop/gff/merge.py
mirtop/gff/query.py
mirtop/gff/stats.py
mirtop/importer/__init__.py
mirtop/importer/isomirsea.py
mirtop/importer/prost.py
mirtop/importer/seqbuster.py
mirtop/importer/srnabench.py
mirtop/libs/__init__.py
mirtop/libs/do.py
mirtop/libs/fastq.py
mirtop/libs/logger.py
mirtop/libs/parse.py
mirtop/libs/read.py
mirtop/libs/simulator.py
mirtop/libs/utils.py
mirtop/mirna/__init__.py
mirtop/mirna/annotate.py
mirtop/mirna/fasta.py
mirtop/mirna/keys.py
mirtop/mirna/mapper.py
mirtop/mirna/realign.py
mirtop/mirna/snps.py
test/test_automated_analysis.py
test/test_functions.py