Metadata-Version: 1.1
Name: mirtop
Version: 0.1.7
Summary: Small RNA-seq annotation
Home-page: http://github.com/mirtop/mirtop
Author: Lorena Pantano
Author-email: lorena.pantano@gmail.com
License: MIT
Description: mirtop
        ---------
        
        [![](https://travis-ci.org/miRTop/mirtop.svg?branch=master)](https://travis-ci.org/miRTop/mirtop#)
        [![Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](http://www.repostatus.org/badges/latest/wip.svg)](http://www.repostatus.org/#wip)
        
        Command line tool to annotate with a standard naming miRNAs e isomiRs.
        
        See more at: [isomiRs naming discussion](https://github.com/miRTop/incubator/blob/master/isomirs/isomir_naming.md)
        
        Cite
        ---------
        
        http://mirtop.github.io
        
        About
        -----
        
        Join the team: https://orgmanager.miguelpiedrafita.com/join/15463928
        
        Read more: http://mirtop.github.io
        
        Installation
        ------------
        Thes best solution is to install conda to get an independent enviroment.
        
        `wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh`
        
        `bash Miniconda-latest-Linux-x86_64.sh -b -p ~/mirtop_env`
        
        `export PATH=$PATH:~/mirtop_env`
        
        `git clone http://github.com/miRTop/mirtop`
        
        `cd mirtop`
        
        `python setup.py develop`
        
        Quick start
        -----------
        
        `cd data`
        `mirtop gff --sps hsa --hairpin examples/annotate/hairpin.fa --mirna examples/annotate/hsa.gff3 -o test_out_mirs_fasta examples/annotate/sim_isomir.sam
        
        Output
        ------
        
        There will be a `*.mirna` file that is a tabular file with this format:
        
        Naming of isomiRs follow these rules: https://github.com/miRTop/incubator/blob/master/format/definition.md
        
        Contributors
        ------------
        
        * [Lorena Pantano](https://github.com/lpantano) (Bioinformatic Core, Harvard Chan School, Boston, USA)
        
        
Keywords: RNA-seq miRNA isomiRs annotation
Platform: UNKNOWN
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
