LICENSE.txt
MANIFEST.in
README.md
sampleData_HEKvsK562.txt
setup.py
mimseq/__init__.py
mimseq/ccaPlots.R
mimseq/coveragePlot.R
mimseq/deseq.R
mimseq/getCoverage.py
mimseq/mimseq.py
mimseq/mmQuant.py
mimseq/modPlot.R
mimseq/modifications
mimseq/splitClusters.py
mimseq/ssAlign.py
mimseq/tRNAmap.py
mimseq/tRNAtools.py
mimseq/version.py
mimseq.egg-info/PKG-INFO
mimseq.egg-info/SOURCES.txt
mimseq.egg-info/dependency_links.txt
mimseq.egg-info/entry_points.txt
mimseq.egg-info/not-zip-safe
mimseq.egg-info/requires.txt
mimseq.egg-info/top_level.txt
mimseq/data/additionalMods.txt
mimseq/data/additionalMods_all.txt
mimseq/data/additionalMods_original.txt
mimseq/data/modomics
mimseq/data/modomics_orig
mimseq/data/tRNAmatureseq.cm
mimseq/data/araTha1-eColitK/README.txt
mimseq/data/araTha1-eColitK/araTha1-PtRNAdb-mito-searchResults.txt
mimseq/data/araTha1-eColitK/araTha1-PtRNAdb-plastid-searchResults.txt
mimseq/data/araTha1-eColitK/araTha1-filtered-tRNAs.fa
mimseq/data/araTha1-eColitK/araTha1-mature-tRNAs.fa
mimseq/data/araTha1-eColitK/araTha1-mitotRNAs.fa
mimseq/data/araTha1-eColitK/araTha1-plastidtRNAs.fa
mimseq/data/araTha1-eColitK/araTha1-tRNAs-confidence-set.out
mimseq/data/araTha1-eColitK/araTha1-tRNAs-confidence-set.ss
mimseq/data/araTha1-eColitK/araTha1-tRNAs-detailed.out
mimseq/data/araTha1-eColitK/araTha1-tRNAs-detailed.ss
mimseq/data/araTha1-eColitK/araTha1-tRNAs.bed
mimseq/data/araTha1-eColitK/araTha1-tRNAs.fa
mimseq/data/araTha1-eColitK/araTha1-tRNAs_name_map.txt
mimseq/data/araTha1-eColitK/convertPtRNAdbSearch.py
mimseq/data/ce11-tRNAs/ce11-mitotRNAs.fa
mimseq/data/ce11-tRNAs/ce11-tRNAs-detailed.out
mimseq/data/ce11-tRNAs/ce11-tRNAs.bed
mimseq/data/ce11-tRNAs/ce11-tRNAs.fa
mimseq/data/ce11-tRNAs/ce11-tRNAs_name_map.txt
mimseq/data/danRer11-eColitK/README.txt
mimseq/data/danRer11-eColitK/danRer11-mitotRNAs.fa
mimseq/data/danRer11-eColitK/danRer11-tRNAs.bed
mimseq/data/danRer11-eColitK/danRer11_eColitK.fa
mimseq/data/danRer11-eColitK/danRer11_eColitK_filtered.fa
mimseq/data/danRer11-eColitK/danRer11_eschColi-tRNAs.out
mimseq/data/danRer11-eColitK/filterList.txt
mimseq/data/danRer11-eColitK/filtertRNAs.py
mimseq/data/dm6-eColitK/dm6-mitotRNAs.fa
mimseq/data/dm6-eColitK/dm6-tRNAs.bed
mimseq/data/dm6-eColitK/dm6_eColitK-tRNAs.fa
mimseq/data/dm6-eColitK/dm6_eschColi-tRNAs.out
mimseq/data/dm6-tRNAs/dm6-mitotRNAs.fa
mimseq/data/dm6-tRNAs/dm6-tRNAs.bed
mimseq/data/dm6-tRNAs/dm6-tRNAs.fa
mimseq/data/dm6-tRNAs/dm6-tRNAs.out
mimseq/data/eschColi-K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.bed
mimseq/data/eschColi-K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.fa
mimseq/data/eschColi-K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.out
mimseq/data/eschColi-K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs.ss.sort
mimseq/data/eschColi-K_12_MG1655-tRNAs/eschColi_K_12_MG1655-tRNAs_name_map.txt
mimseq/data/eschColi-tRNA_Lys/eschColi_K_12_MG1655-tRNAs.out
mimseq/data/eschColi-tRNA_Lys/eschColi_modomics.fa
mimseq/data/eschColi-tRNA_Lys/eschColi_tRNA_Lys.fa
mimseq/data/gorGor4-eColitK/FastaHeadersforMimseq.py
mimseq/data/gorGor4-eColitK/README.txt
mimseq/data/gorGor4-eColitK/gorGor4-mitotRNAs.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs-all.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs-all.tmp.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs-detailed.out
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs-filtered.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs-filtered2.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs.bed
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs.fa
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs_name_map.txt
mimseq/data/gorGor4-eColitK/gorGor4-tRNAs_noChr.bed
mimseq/data/hg19-eColitK/FastaHeadersforMimseq.py
mimseq/data/hg19-eColitK/README.txt
mimseq/data/hg19-eColitK/hg19-mitotRNAs.fa
mimseq/data/hg19-eColitK/hg19-tRNAs-all.fa
mimseq/data/hg19-eColitK/hg19-tRNAs-detailed.out
mimseq/data/hg19-eColitK/hg19-tRNAs.bed
mimseq/data/hg19-eColitK/hg19-tRNAs_name_map.txt
mimseq/data/hg19-eColitK/hg19_eschColi-tRNAs.out
mimseq/data/hg19-eColitK-highConf-tRNAs/hg19-mitotRNAs.fa
mimseq/data/hg19-eColitK-highConf-tRNAs/hg19-tRNAs.bed
mimseq/data/hg19-eColitK-highConf-tRNAs/hg19-tRNAs.fa
mimseq/data/hg19-eColitK-highConf-tRNAs/hg19_eschColi-tRNAs.out
mimseq/data/hg38-eColitK/FastaHeadersforMimseq.py
mimseq/data/hg38-eColitK/README.txt
mimseq/data/hg38-eColitK/hg38-mitotRNAs.fa
mimseq/data/hg38-eColitK/hg38-tRNAs-all.fa
mimseq/data/hg38-eColitK/hg38-tRNAs-detailed.out
mimseq/data/hg38-eColitK/hg38-tRNAs-filtered.fa
mimseq/data/hg38-eColitK/hg38-tRNAs.bed
mimseq/data/hg38-eColitK/hg38-tRNAs.fa
mimseq/data/hg38-eColitK/hg38-tRNAs_name_map.txt
mimseq/data/hg38-eColitK_GlyTCCmutant/FastaHeadersforMimseq.py
mimseq/data/hg38-eColitK_GlyTCCmutant/README.txt
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-mitotRNAs.fa
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs-all.fa
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs-detailed.out
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs-filtered.fa
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs.bed
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs.fa
mimseq/data/hg38-eColitK_GlyTCCmutant/hg38-tRNAs_name_map.txt
mimseq/data/mm10-eColitK/mm10-mitotRNAs.fa
mimseq/data/mm10-eColitK/mm10_eColitK-tRNAs.fa
mimseq/data/mm10-eColitK/mm10_eschColi-tRNAs.out
mimseq/data/mm10-tRNAs/mm10-mitotRNAs.fa
mimseq/data/mm10-tRNAs/mm10-tRNAs.fa
mimseq/data/mm10-tRNAs/mm10-tRNAs.out.filtered-noPseudo-noChrM
mimseq/data/mm39-eColitK/FastaHeadersforMimseq.py
mimseq/data/mm39-eColitK/README.txt
mimseq/data/mm39-eColitK/mm39-mitotRNAs.fa
mimseq/data/mm39-eColitK/mm39-tRNAs-all.fa
mimseq/data/mm39-eColitK/mm39-tRNAs-detailed.out
mimseq/data/mm39-eColitK/mm39-tRNAs.bed
mimseq/data/mm39-eColitK/mm39-tRNAs_name_map.txt
mimseq/data/rn7-eColitK/README.txt
mimseq/data/rn7-eColitK/rn7-mitotRNAs.fa
mimseq/data/rn7-eColitK/rn7-tRNAs-confidence-set.out
mimseq/data/rn7-eColitK/rn7-tRNAs.bed
mimseq/data/rn7-eColitK/rn7-tRNAs.fa
mimseq/data/rn7-eColitK/rn7_eColitK-tRNAs-confidence-set.out
mimseq/data/sacCer3-Phe_SynVsPur/sacCer3-Phe.fa
mimseq/data/sacCer3-Phe_SynVsPur/sacCer3-tRNAs.fa
mimseq/data/sacCer3-Phe_SynVsPur/sacCer3-tRNAs.out-noChrM
mimseq/data/sacCer3-eColitK/Turk_2013_mitotRNAbounds_Tab1.bed
mimseq/data/sacCer3-eColitK/sacCer3-mitotRNAs.fa
mimseq/data/sacCer3-eColitK/sacCer3-tRNAs.bed
mimseq/data/sacCer3-eColitK/sacCer3_eschColi-tRNAs.out
mimseq/data/sacCer3-eColitK/sacCer3_eschColitK.fa
mimseq/data/sacCer3-tRNAs/sacCer3-mitotRNAs.fa
mimseq/data/sacCer3-tRNAs/sacCer3-tRNAs.bed
mimseq/data/sacCer3-tRNAs/sacCer3-tRNAs.fa
mimseq/data/sacCer3-tRNAs/sacCer3-tRNAs.out-noChrM
mimseq/data/sacCer3-tRNAs/sacCer3-tRNAs.ss.sort
mimseq/data/sacCer3-tRNAs_mutant/README.txt
mimseq/data/sacCer3-tRNAs_mutant/Turk_2013_mitotRNAbounds_Tab1.bed
mimseq/data/sacCer3-tRNAs_mutant/sacCer3-mitotRNAs.fa
mimseq/data/sacCer3-tRNAs_mutant/sacCer3-tRNAs.bed
mimseq/data/sacCer3-tRNAs_mutant/sacCer3_eschColi-tRNAs.out
mimseq/data/sacCer3-tRNAs_mutant/sacCer3_eschColitK.fa
mimseq/data/sacCer3_modOligos/sacCer3_eschColi-tRNAs.out
mimseq/data/sacCer3_modOligos/sacCer3_eschColitK.fa
mimseq/data/sacCer3_modOligos/sacCer3_oligoRefsOnly.fa
mimseq/data/schiPomb-972H/schiPomb-mitotRNAs.fa
mimseq/data/schiPomb-972H/schiPomb_972H-tRNAs.bed
mimseq/data/schiPomb-972H/schiPomb_972H-tRNAs.fa
mimseq/data/schiPomb-972H/schiPomb_972H-tRNAs.out.noChrM
mimseq/data/schiPomb-972H/schiPomb_972H-tRNAs.ss.sort
mimseq/data/schiPomb-eColitK/schiPomb-mitotRNAs.fa
mimseq/data/schiPomb-eColitK/schiPomb_972H-tRNAs.fa
mimseq/data/schiPomb-eColitK/schiPomb_eschColi-tRNAs.out