biopython>=1.78
docutils
drmaa
hypothesis
msgpack>=1.0.0
networkx>=2.3
numpy>=1.17.2
pandas>=1.0
pip
pysam>=0.15.3
pyyaml>=5.1.2
scipy>=1.3.1
snakemake>=5.7.0
sqlalchemy>=1.4.0
sqlalchemy-utils>=0.37
tabulate>=0.8.5
pytest>=5.4.1
python-rapidjson>=1.0.0
toml>=0.10.0
pyfaidx>=0.5.8
marshmallow
marshmallow-dataclass
typeguard

[:python_version < "3.7"]
dataclasses

[bam]
pysam>=0.8

[mysql]
mysqlclient>=1.3.6

[postgresql]
psycopg2
