.coveragerc
.gitignore
.gitlab-ci.yml
.python-version
LICENSE
README.md
pyproject.toml
uv.lock
.zed/tasks.json
LICENSES/AGPL-3.0-or-later.txt
doc/.Rprofile
doc/lib.bib
doc/presentation.qmd
doc/presentation.qmd.license
doc/renv.lock
doc/renv.lock.license
doc/img/comp-graph-dark.png
doc/img/comp-graph-dark.png.license
doc/img/copula_example.png
doc/img/copula_example.png.license
doc/img/down_the_rabit_hole.jpg
doc/img/down_the_rabit_hole.jpg.license
doc/img/errors.png
doc/img/errors.png.license
doc/img/g_m1.png
doc/img/g_m1.png.license
doc/img/g_m1_zoom.png
doc/img/g_m1_zoom.png.license
doc/img/gaussian_cop_vs_gumel_cop.png
doc/img/gaussian_cop_vs_gumel_cop.png.license
doc/img/gradient_descent.gif
doc/img/gradient_descent.gif.license
doc/img/rust-logo-256x256.png
doc/img/rust-logo-256x256.png.license
doc/img/samic_vs_idr.png
doc/img/samic_vs_idr.png.license
doc/img/sgd_vs_lbfgsb.gif
doc/img/sgd_vs_lbfgsb.gif.license
doc/renv/.gitignore
doc/renv/activate.R
doc/renv/settings.json
doc/renv/settings.json.license
extra/chipseq.ipynb
extra/hic.ipynb
extra/pyproject.toml
extra/uv.lock
midr/__init__.py
midr/main.py
midr.egg-info/PKG-INFO
midr.egg-info/SOURCES.txt
midr.egg-info/dependency_links.txt
midr.egg-info/entry_points.txt
midr.egg-info/requires.txt
midr.egg-info/top_level.txt
midr/auxilary/__init__.py
midr/auxilary/auxilary_test.py
midr/auxilary/ecdf.py
midr/auxilary/ecdf_test.py
midr/auxilary/fdr.py
midr/auxilary/fdr_test.py
midr/auxilary/fit.py
midr/auxilary/plot.py
midr/auxilary/transform.py
midr/auxilary/utils.py
midr/auxilary/utils_test.py
midr/copula/__init__.py
midr/copula/copula.py
midr/copula/empirical_beta.py
midr/copula/empirical_beta_test.py
midr/copula/gaussian.py
midr/copula/gaussian_test.py
midr/copula/independence.py
midr/copula/independence_test.py
midr/copula/archimedean/__init__.py
midr/copula/archimedean/archimedean.py
midr/copula/archimedean/clayton.py
midr/copula/archimedean/clayton_test.py
midr/copula/archimedean/frank.py
midr/copula/archimedean/frank_test.py
midr/copula/archimedean/gumbel.py
midr/copula/archimedean/gumbel_test.py
midr/copula/mixture/__init__.py
midr/copula/mixture/archmixture.py
midr/copula/mixture/archmixture_test.py
midr/copula/mixture/indepmixture.py
midr/copula/mixture/indepmixture_test.py
midr/copula/mixture/mixture.py
midr/doc/__init__.py
midr/doc/figures.py
midr/idr/__init__.py
midr/idr/idr.py
midr/idr/idr_test.py
midr/marginal/__init__.py
midr/marginal/fixed_gaussian.py
midr/marginal/fixed_gaussian_test.py
midr/marginal/gaussian.py
midr/marginal/gaussian_mixture.py
midr/marginal/gaussian_mixture_test.py
midr/marginal/gaussian_test.py
midr/marginal/marginal.py
midr/mixture/__init__.py
midr/mixture/mixture.py
midr/mixture/mixture_test.py
midr/mixture/multivariate.py
midr/mixture/multivarite_test.py
midr/pseudo_mixture/__init__.py
midr/pseudo_mixture/indep_mixture.py
midr/pseudo_mixture/indep_mixture_test.py