README.md
setup.py
mhcflurry/__init__.py
mhcflurry/allele_encoding.py
mhcflurry/amino_acid.py
mhcflurry/calibrate_percentile_ranks_command.py
mhcflurry/class1_affinity_predictor.py
mhcflurry/class1_neural_network.py
mhcflurry/class1_presentation_predictor.py
mhcflurry/class1_processing_neural_network.py
mhcflurry/class1_processing_predictor.py
mhcflurry/cluster_parallelism.py
mhcflurry/common.py
mhcflurry/custom_loss.py
mhcflurry/data_dependent_weights_initialization.py
mhcflurry/downloads.py
mhcflurry/downloads.yml
mhcflurry/downloads_command.py
mhcflurry/encodable_sequences.py
mhcflurry/ensemble_centrality.py
mhcflurry/fasta.py
mhcflurry/flanking_encoding.py
mhcflurry/hyperparameters.py
mhcflurry/local_parallelism.py
mhcflurry/percent_rank_transform.py
mhcflurry/predict_command.py
mhcflurry/predict_scan_command.py
mhcflurry/random_negative_peptides.py
mhcflurry/regression_target.py
mhcflurry/scoring.py
mhcflurry/select_allele_specific_models_command.py
mhcflurry/select_pan_allele_models_command.py
mhcflurry/select_processing_models_command.py
mhcflurry/testing_utils.py
mhcflurry/train_allele_specific_models_command.py
mhcflurry/train_pan_allele_models_command.py
mhcflurry/train_presentation_models_command.py
mhcflurry/train_processing_models_command.py
mhcflurry/version.py
mhcflurry.egg-info/PKG-INFO
mhcflurry.egg-info/SOURCES.txt
mhcflurry.egg-info/dependency_links.txt
mhcflurry.egg-info/entry_points.txt
mhcflurry.egg-info/requires.txt
mhcflurry.egg-info/top_level.txt
test/test_allele_encoding.py
test/test_amino_acid.py
test/test_calibrate_percentile_ranks_command.py
test/test_changing_allele_representations.py
test/test_class1_affinity_predictor.py
test/test_class1_neural_network.py
test/test_class1_pan.py
test/test_class1_presentation_predictor.py
test/test_class1_processing_neural_network.py
test/test_class1_processing_predictor.py
test/test_custom_loss.py
test/test_doctest.py
test/test_download_models_class1.py
test/test_ensemble_centrality.py
test/test_hyperparameters.py
test/test_multi_output.py
test/test_network_merging.py
test/test_percent_rank_transform.py
test/test_predict_command.py
test/test_predict_scan_command.py
test/test_random_negative_peptides.py
test/test_regression_target.py
test/test_released_predictors_on_hpv_dataset.py
test/test_released_predictors_well_correlated.py
test/test_speed.py
test/test_train_and_related_commands.py
test/test_train_pan_allele_models_command.py
test/test_train_processing_models_command.py