setup.py
mhcflurry/__init__.py
mhcflurry/amino_acid.py
mhcflurry/common.py
mhcflurry/downloads.py
mhcflurry/downloads.yml
mhcflurry/downloads_command.py
mhcflurry/encodable_sequences.py
mhcflurry/hyperparameters.py
mhcflurry/predict_command.py
mhcflurry/regression_target.py
mhcflurry/scoring.py
mhcflurry.egg-info/PKG-INFO
mhcflurry.egg-info/SOURCES.txt
mhcflurry.egg-info/dependency_links.txt
mhcflurry.egg-info/entry_points.txt
mhcflurry.egg-info/requires.txt
mhcflurry.egg-info/top_level.txt
mhcflurry/antigen_presentation/__init__.py
mhcflurry/antigen_presentation/percent_rank_transform.py
mhcflurry/antigen_presentation/presentation_model.py
mhcflurry/antigen_presentation/decoy_strategies/__init__.py
mhcflurry/antigen_presentation/decoy_strategies/decoy_strategy.py
mhcflurry/antigen_presentation/decoy_strategies/same_transcripts_as_hits.py
mhcflurry/antigen_presentation/decoy_strategies/uniform_random.py
mhcflurry/antigen_presentation/presentation_component_models/__init__.py
mhcflurry/antigen_presentation/presentation_component_models/expression.py
mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py
mhcflurry/antigen_presentation/presentation_component_models/fixed_per_peptide_and_transcript_quantity.py
mhcflurry/antigen_presentation/presentation_component_models/fixed_per_peptide_quantity.py
mhcflurry/antigen_presentation/presentation_component_models/mhc_binding_component_model_base.py
mhcflurry/antigen_presentation/presentation_component_models/mhcflurry_released.py
mhcflurry/antigen_presentation/presentation_component_models/mhcflurry_trained_on_hits.py
mhcflurry/antigen_presentation/presentation_component_models/presentation_component_model.py
mhcflurry/class1_affinity_prediction/__init__.py
mhcflurry/class1_affinity_prediction/class1_affinity_predictor.py
mhcflurry/class1_affinity_prediction/class1_neural_network.py
mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py
test/test_antigen_presentation.py
test/test_class1_affinity_predictor.py
test/test_class1_neural_network.py
test/test_download_models_class1.py
test/test_encodable_sequences.py
test/test_hyperparameters.py
test/test_predict_command.py
test/test_regression_target.py
test/test_train_allele_specific_models_command.py