MANIFEST.in
README.md
setup.py
mgefinder/__init__.py
mgefinder/blasttools.py
mgefinder/bowtie2tools.py
mgefinder/bwatools.py
mgefinder/cdhittools.py
mgefinder/clusterseq.py
mgefinder/dependencies.py
mgefinder/embosstools.py
mgefinder/fastatools.py
mgefinder/find.py
mgefinder/formatbam.py
mgefinder/genotype.py
mgefinder/help.py
mgefinder/inferseq.py
mgefinder/inferseqassembly.py
mgefinder/inferseqdatabase.py
mgefinder/inferseqoverlap.py
mgefinder/inferseqreference.py
mgefinder/main.py
mgefinder/makedatabase.py
mgefinder/makefasta.py
mgefinder/misc.py
mgefinder/pair.py
mgefinder/pysamtools.py
mgefinder/recall.py
mgefinder/samtools.py
mgefinder/sctools.py
mgefinder/summarize.py
mgefinder/terminustrie.py
mgefinder/wholegenome.py
mgefinder/workflow.py
mgefinder.egg-info/PKG-INFO
mgefinder.egg-info/SOURCES.txt
mgefinder.egg-info/dependency_links.txt
mgefinder.egg-info/entry_points.txt
mgefinder.egg-info/not-zip-safe
mgefinder.egg-info/requires.txt
mgefinder.egg-info/top_level.txt
mgefinder/workflow/Snakefile
mgefinder/workflow/config.yml