LICENSE
MANIFEST.in
README.md
README.rst
pyproject.toml
setup.cfg
setup.py
docs/Makefile
docs/conf.py
docs/envelope.png
docs/index.rst
docs/make.bat
docs/mewpy-2.png
docs/mewpy-3.png
docs/mewpy-arch.png
docs/mewpy.io.rst
docs/mewpy.model.data.rst
docs/mewpy.model.rst
docs/mewpy.optimization.inspyred.rst
docs/mewpy.optimization.jmetal.rst
docs/mewpy.optimization.rst
docs/mewpy.problems.rst
docs/mewpy.regulation.rst
docs/mewpy.rst
docs/mewpy.simulation.rst
docs/mewpy.utils.rst
docs/mewpy.visualization.rst
docs/modules.rst
src/mewpy/__init__.py
src/mewpy.egg-info/PKG-INFO
src/mewpy.egg-info/SOURCES.txt
src/mewpy.egg-info/dependency_links.txt
src/mewpy.egg-info/requires.txt
src/mewpy.egg-info/top_level.txt
src/mewpy.egg-info/zip-safe
src/mewpy/cobra/__init__.py
src/mewpy/cobra/parsimonious.py
src/mewpy/io/__init__.py
src/mewpy/io/builder.py
src/mewpy/io/director.py
src/mewpy/io/dto.py
src/mewpy/io/reader.py
src/mewpy/io/sbml.py
src/mewpy/io/writer.py
src/mewpy/io/engines/__init__.py
src/mewpy/io/engines/cobra.py
src/mewpy/io/engines/csv.py
src/mewpy/io/engines/engine.py
src/mewpy/io/engines/engines_utils.py
src/mewpy/io/engines/json.py
src/mewpy/io/engines/sbml.py
src/mewpy/mew/__init__.py
src/mewpy/mew/algebra/__init__.py
src/mewpy/mew/algebra/algebra_constants.py
src/mewpy/mew/algebra/algebra_utils.py
src/mewpy/mew/algebra/expression.py
src/mewpy/mew/algebra/parsing.py
src/mewpy/mew/algebra/symbolic.py
src/mewpy/mew/analysis/__init__.py
src/mewpy/mew/analysis/analysis_utils.py
src/mewpy/mew/analysis/fba.py
src/mewpy/mew/analysis/integrated_analysis.py
src/mewpy/mew/analysis/metabolic_analysis.py
src/mewpy/mew/analysis/milp_bool.py
src/mewpy/mew/analysis/regulatory_analysis.py
src/mewpy/mew/analysis/rfba.py
src/mewpy/mew/analysis/sim_bool.py
src/mewpy/mew/analysis/srfba.py
src/mewpy/mew/lp/__init__.py
src/mewpy/mew/lp/linear_containers.py
src/mewpy/mew/lp/linear_problem.py
src/mewpy/mew/lp/linear_utils.py
src/mewpy/mew/lp/linearizer.py
src/mewpy/mew/lp/notification.py
src/mewpy/mew/solution/__init__.py
src/mewpy/mew/solution/model_solution.py
src/mewpy/mew/solution/multi_solution.py
src/mewpy/mew/solution/solution.py
src/mewpy/mew/variables/__init__.py
src/mewpy/mew/variables/coefficient.py
src/mewpy/mew/variables/gene.py
src/mewpy/mew/variables/interaction.py
src/mewpy/mew/variables/metabolite.py
src/mewpy/mew/variables/reaction.py
src/mewpy/mew/variables/regulator.py
src/mewpy/mew/variables/target.py
src/mewpy/mew/variables/variable.py
src/mewpy/model/__init__.py
src/mewpy/model/gecko.py
src/mewpy/model/kinetic.py
src/mewpy/model/metabolic.py
src/mewpy/model/model.py
src/mewpy/model/regulatory.py
src/mewpy/model/smoment.py
src/mewpy/model/data/__init__.py
src/mewpy/model/data/ecYeastGEM_multi-pool.xml
src/mewpy/model/data/ecYeastGEM_single-pool.xml
src/mewpy/model/data/proteins.txt
src/mewpy/omics/__init__.py
src/mewpy/omics/expression.py
src/mewpy/omics/integration/__init__.py
src/mewpy/omics/integration/eflux.py
src/mewpy/omics/integration/gimme.py
src/mewpy/omics/integration/imat.py
src/mewpy/optimization/__init__.py
src/mewpy/optimization/ea.py
src/mewpy/optimization/evaluation.py
src/mewpy/optimization/settings.py
src/mewpy/optimization/inspyred/__init__.py
src/mewpy/optimization/inspyred/ea.py
src/mewpy/optimization/inspyred/observers.py
src/mewpy/optimization/inspyred/operators.py
src/mewpy/optimization/inspyred/problem.py
src/mewpy/optimization/inspyred/settings.py
src/mewpy/optimization/inspyred/terminator.py
src/mewpy/optimization/jmetal/__init__.py
src/mewpy/optimization/jmetal/ea.py
src/mewpy/optimization/jmetal/observers.py
src/mewpy/optimization/jmetal/operators.py
src/mewpy/optimization/jmetal/problem.py
src/mewpy/optimization/jmetal/settings.py
src/mewpy/problems/__init__.py
src/mewpy/problems/com.py
src/mewpy/problems/etfl.py
src/mewpy/problems/gecko.py
src/mewpy/problems/genes.py
src/mewpy/problems/optorf.py
src/mewpy/problems/optram.py
src/mewpy/problems/problem.py
src/mewpy/problems/reactions.py
src/mewpy/simulation/__init__.py
src/mewpy/simulation/cobra.py
src/mewpy/simulation/environment.py
src/mewpy/simulation/kinetic.py
src/mewpy/simulation/mew.py
src/mewpy/simulation/reframed.py
src/mewpy/simulation/simulation.py
src/mewpy/solvers/__init__.py
src/mewpy/solvers/cplex_solver.py
src/mewpy/solvers/gurobi_solver.py
src/mewpy/solvers/ode.py
src/mewpy/solvers/odespy_solver.py
src/mewpy/solvers/optlang_solver.py
src/mewpy/solvers/scikits_solver.py
src/mewpy/solvers/scipy_solver.py
src/mewpy/solvers/solution.py
src/mewpy/solvers/solver.py
src/mewpy/util/__init__.py
src/mewpy/util/constants.py
src/mewpy/util/crossmodel.py
src/mewpy/util/graph.py
src/mewpy/util/history.py
src/mewpy/util/io.py
src/mewpy/util/parsing.py
src/mewpy/util/process.py
src/mewpy/util/serialization.py
src/mewpy/util/utilities.py
src/mewpy/visualization/__init__.py
src/mewpy/visualization/envelope.py
src/mewpy/visualization/escher.py
src/mewpy/visualization/plot.py