MANIFEST.in
README.md
setup.cfg
setup.py
docs/.DS_Store
docs/bead-array.md
docs/example_ReportPDF.png
docs/example_controls_report.png
docs/filtering-probes.ipynb
docs/loading-data.ipynb
docs/methylcheck_functions.png
docs/methylcheck_overview.png
docs/plot_M_vs_U_compare_dye_noob_to_raw.png
docs/python3.6.png
docs/quality-control-example.ipynb
docs/release-history.md
docs/test_betas.pkl
methylcheck/__init__.py
methylcheck/__main__.py
methylcheck/cli.py
methylcheck/load_processed.py
methylcheck/p_value_probe_detection.py
methylcheck/progress_bar.py
methylcheck/qc_plot.py
methylcheck/read_geo_processed.py
methylcheck/version.py
methylcheck.egg-info/PKG-INFO
methylcheck.egg-info/SOURCES.txt
methylcheck.egg-info/dependency_links.txt
methylcheck.egg-info/entry_points.txt
methylcheck.egg-info/requires.txt
methylcheck.egg-info/top_level.txt
methylcheck/data_files/450k_Sesame.txt.gz
methylcheck/data_files/450k_control.npy
methylcheck/data_files/450k_polymorphic_crossRxtve_probes.csv.gz
methylcheck/data_files/450k_sex.npy
methylcheck/data_files/EPIC+_control.npy
methylcheck/data_files/EPIC+_sex.npy
methylcheck/data_files/EPIC_Sesame.txt.gz
methylcheck/data_files/EPIC_control.npy
methylcheck/data_files/EPIC_polymorphic_crossRxtve_probes.csv.gz
methylcheck/data_files/EPIC_sex.npy
methylcheck/data_files/__init__.py
methylcheck/data_files/illumina_sketchy_probes_996.npy
methylcheck/predict/__init__.py
methylcheck/predict/sex.py
methylcheck/probes/__init__.py
methylcheck/probes/filters.py
methylcheck/reports/__init__.py
methylcheck/reports/bead_array.py
methylcheck/reports/qc_report.py
methylcheck/samples/__init__.py
methylcheck/samples/assign_groups.py
methylcheck/samples/postprocessQC.py
methylcheck/samples/sklearn_mds.py