Metadata-Version: 2.1
Name: metawards
Version: 0.2.0a0
Summary: MetaWards disease metapopulation modelling
Home-page: https://github.com/chryswoods/metawards
Author: Leon Danon (original C code), Christopher Woods (Python port)
Author-email: l.danon@bristol.ac.uk, Christopher.Woods@bristol.ac.uk
License: GPL3
Project-URL: Documentation, https://github.com/chryswoods/metawards
Project-URL: Code, https://github.com/chryswoods/metawards
Project-URL: Issue tracker, https://github.com/chryswoods/metawards/issues
Description: # MetaWards
        
        ## References
        
        - _"Individual identity and movement networks for disease metapopulations"_
        Matt J. Keeling, Leon Danon, Matthew C. Vernon, Thomas A. House
        Proceedings of the National Academy of Sciences May 2010, 107 (19) 8866-8870; DOI: [10.1073/pnas.1000416107](https://doi.org/10.1073/pnas.1000416107)
        
        - _"A spatial model of CoVID-19 transmission in England and Wales: early spread and peak timing"_
        Leon Danon, Ellen Brooks-Pollock, Mick Bailey, Matt J Keeling
        medRxiv 2020.02.12.20022566; doi: [10.1101/2020.02.12.20022566](https://doi.org/10.1101/2020.02.12.20022566)
        
        ## Summary
        
        This repository has the code used for the papers and preprints in the References section
        
        ## Dependancies
        
        The code depends on the [GSL - the GNU Scientific Library](https://www.gnu.org/software/gsl/), install with your operating 
        system's package manager or load the appropriate module if you are on an HPC system.
        
        ## Building
        
        Clone the repository 
        
        ```ShellSession
        [user@host ~]$ git clone https://github.com/ldanon/MetaWards.git
        ```
        
        Change in to the repository and run `make`
        
        ```ShellSession
        [user@host ~]$ cd MetaWards
        [user@host MetaWards]$ make
        ```
        
        This produces an executable named `wards.o`
        
        ## Running
        
        MetaWards currently expects the data files to be found in a hard coded path under your home Directory 
        `~/GitHub/MetaWards/2011Data/`. If you don't have the cloned repository there you can create a symlink.
        
        ### Running a single experiment
        
        ```ShellSession
        [user@host MetaWards]$ mkdir expt
        [user@host MetaWards]$ cd expt
        [user@host MetaWards]$ ../wards.o 42 Testing/ncovparams.csv  4 1
        ```
        
        Where the command line arguments are
        
        ```
        ./wards.o <RANDOM_SEED> <PARAMETER_FILE> <SOME_NUMBER> <SOME_OTHER_NUMBER>
        ```
        
        ### Running an ensemble
        
        To run multiple experiments use the driving shellscript `run_repeats.sh`
        
        
Platform: UNKNOWN
Classifier: Development Status :: 1 - Planning
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Intended Audience :: Education
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: C
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: Implementation :: CPython
Requires-Python: >=3.7
Description-Content-Type: text/markdown
Provides-Extra: dev
Provides-Extra: docs
