from metameq.src.util import HOSTTYPE_SHORTHAND_KEY, SAMPLETYPE_SHORTHAND_KEY, \
    SAMPLE_TYPE_KEY, QC_NOTE_KEY, LEAVE_BLANK_VAL, DO_NOT_USE_VAL, \
    NOT_PROVIDED_VAL, HOST_SUBJECT_ID_KEY, SAMPLE_NAME_KEY, \
    COLLECTION_TIMESTAMP_KEY, METADATA_TRANSFORMERS_KEY, SOURCES_KEY, \
    FUNCTION_KEY, PRE_TRANSFORMERS_KEY, POST_TRANSFORMERS_KEY, \
    extract_config_dict, deepcopy_dict, load_df_with_best_fit_encoding
from metameq.src.metadata_configurator import build_full_flat_config_dict
from metameq.src.metadata_extender import \
    write_extended_metadata, write_extended_metadata_from_df, \
    write_validator_metadata, \
    get_reserved_cols, extend_metadata_df_from_yamls, \
    write_metadata_results, id_missing_cols, find_standard_cols, \
    find_nonstandard_cols, get_qc_failures, extend_metadata_df
from metameq.src.metadata_merger import merge_sample_and_subject_metadata, \
    merge_many_to_one_metadata, merge_one_to_one_metadata, \
    find_common_col_names, find_common_df_cols
from metameq.src.metadata_transformers import \
    format_a_datetime, standardize_input_sex, set_life_stage_from_age_yrs, \
    transform_input_sex_to_std_sex, transform_age_to_life_stage, \
    transform_date_to_formatted_date

__all__ = ["HOSTTYPE_SHORTHAND_KEY", "SAMPLETYPE_SHORTHAND_KEY",
           "SAMPLE_TYPE_KEY", "QC_NOTE_KEY", "LEAVE_BLANK_VAL",
           "DO_NOT_USE_VAL", "NOT_PROVIDED_VAL",
           "HOST_SUBJECT_ID_KEY", "SAMPLE_NAME_KEY",
           "COLLECTION_TIMESTAMP_KEY", "METADATA_TRANSFORMERS_KEY",
           "SOURCES_KEY", "FUNCTION_KEY", "PRE_TRANSFORMERS_KEY",
           "POST_TRANSFORMERS_KEY",
           "extract_config_dict", "build_full_flat_config_dict",
           "deepcopy_dict", "load_df_with_best_fit_encoding",
           "merge_sample_and_subject_metadata", "merge_many_to_one_metadata",
           "merge_one_to_one_metadata", "find_common_col_names",
           "find_common_df_cols",
           "write_extended_metadata", "extend_metadata_df_from_yamls",
           "write_extended_metadata_from_df", "write_validator_metadata",
           "write_metadata_results",
           "get_reserved_cols", "id_missing_cols", "find_standard_cols",
           "find_nonstandard_cols", "get_qc_failures",
           "format_a_datetime", "standardize_input_sex",
           "set_life_stage_from_age_yrs", "transform_input_sex_to_std_sex",
           "transform_age_to_life_stage", "transform_date_to_formatted_date",
           "extend_metadata_df"]

from . import _version
__version__ = _version.get_versions()['version']
