# Species Mapping Configuration Template
# Add this to your metagene package after generating Parquet files

BUILTIN_SPECIES = {
    # Human
    "GRCh38": "GRCh38.parquet",
    "hg38": "hg38.parquet",
    "GRCh37": "GRCh37.parquet",
    "hg19": "hg19.parquet",
    # Mouse
    "GRCm39": "GRCm39.parquet",
    "mm39": "mm39.parquet",
    "GRCm38": "GRCm38.parquet",
    "mm10": "mm10.parquet",
    "mm9": "mm9.parquet",
    "NCBIM37": "NCBIM37.parquet",
    # Model organisms
    "TAIR10": "TAIR10.parquet",  # Arabidopsis
    "IRGSP-1.0": "IRGSP-1.0.parquet",  # Rice
    "WBcel235": "WBcel235.parquet",  # C. elegans
    "ce11": "ce11.parquet",  # C. elegans
    "BDGP6.32": "BDGP6.32.parquet",  # Drosophila
    "dm6": "dm6.parquet",  # Drosophila
    "GRCz11": "GRCz11.parquet",  # Zebrafish
    "GRCz10": "GRCz10.parquet",  # Zebrafish
    "bGalGal1": "bGalGal1.parquet",  # Chicken
    "Glycine_max_v2.1": "Glycine_max_v2.1.parquet",  # Soybean
    "R64-1-1": "R64-1-1.parquet",  # S. cerevisiae
    "sacCer3": "sacCer3.parquet",  # S. cerevisiae
    "ASM294v2": "ASM294v2.parquet",  # S. pombe
}
