LICENSE
README.md
pyproject.toml
setup.cfg
metabOmics.egg-info/PKG-INFO
metabOmics.egg-info/SOURCES.txt
metabOmics.egg-info/dependency_links.txt
metabOmics.egg-info/top_level.txt
metabomics/main_create_imputer_models.py
metabomics/main_filling.py
metabomics/main_flux_type_performance_test.py
metabomics/main_metabGene_breast_v0.py
metabomics/main_metabGene_breast_v0_wout_pathway_score.py
metabomics/main_metabGene_ccRCC3_v0.py
metabomics/main_metabGene_ccRCC4_v0.py
metabomics/main_metabGene_coad_v0.py
metabomics/main_metabGene_pdac_v0.py
metabomics/main_metabGene_prostat_v0.py
metabomics/main_metabolights_pipeline.py
metabomics/main_tune_imputer_models.py
metabomics/main_workbench_pipeline.py
metabomics/mean_react_diff_scores.py
metabomics/metabolights_data_pipeline.py
metabomics/metabolights_downloader.py
metabomics/tests.py
metabomics/workbench_data_pipeline.py
metabomics/analysis/__init__.py
metabomics/analysis/analysis.py
metabomics/analysis/analysis_equal_val.py
metabomics/analysis/analysis_firstVersion.py
metabomics/analysis/analysis_max_trigger.py
metabomics/analysis/analysis_total_trig.py
metabomics/analysis/analysis_update_coeff.py
metabomics/analysis/analysis_v1.py
metabomics/analysis/analysis_v2.py
metabomics/analysis/drugAnalysis.py
metabomics/analysis/tests.py
metabomics/cobra/__init__.py
metabomics/cobra/exceptions.py
metabomics/cobra/core/__init__.py
metabomics/cobra/core/configuration.py
metabomics/cobra/core/dictlist.py
metabomics/cobra/core/formula.py
metabomics/cobra/core/gene.py
metabomics/cobra/core/group.py
metabomics/cobra/core/metabolite.py
metabomics/cobra/core/model.py
metabomics/cobra/core/object.py
metabomics/cobra/core/reaction.py
metabomics/cobra/core/singleton.py
metabomics/cobra/core/solution.py
metabomics/cobra/core/species.py
metabomics/cobra/flux_analysis/__init__.py
metabomics/cobra/flux_analysis/deletion.py
metabomics/cobra/flux_analysis/fastcc.py
metabomics/cobra/flux_analysis/gapfilling.py
metabomics/cobra/flux_analysis/geometric.py
metabomics/cobra/flux_analysis/helpers.py
metabomics/cobra/flux_analysis/loopless.py
metabomics/cobra/flux_analysis/moma.py
metabomics/cobra/flux_analysis/parsimonious.py
metabomics/cobra/flux_analysis/phenotype_phase_plane.py
metabomics/cobra/flux_analysis/reaction.py
metabomics/cobra/flux_analysis/room.py
metabomics/cobra/flux_analysis/variability.py
metabomics/cobra/io/__init__.py
metabomics/cobra/io/dict.py
metabomics/cobra/io/json.py
metabomics/cobra/io/mat.py
metabomics/cobra/io/sbml.py
metabomics/cobra/io/yaml.py
metabomics/cobra/io/web/__init__.py
metabomics/cobra/io/web/abstract_model_repository.py
metabomics/cobra/io/web/bigg_models_repository.py
metabomics/cobra/io/web/biomodels_repository.py
metabomics/cobra/io/web/load.py
metabomics/cobra/manipulation/__init__.py
metabomics/cobra/manipulation/annotate.py
metabomics/cobra/manipulation/delete.py
metabomics/cobra/manipulation/modify.py
metabomics/cobra/manipulation/validate.py
metabomics/cobra/medium/__init__.py
metabomics/cobra/medium/annotations.py
metabomics/cobra/medium/boundary_types.py
metabomics/cobra/medium/minimal_medium.py
metabomics/cobra/sampling/__init__.py
metabomics/cobra/sampling/achr.py
metabomics/cobra/sampling/core.py
metabomics/cobra/sampling/hr_sampler.py
metabomics/cobra/sampling/optgp.py
metabomics/cobra/sampling/sampling.py
metabomics/cobra/summary/__init__.py
metabomics/cobra/summary/metabolite_summary.py
metabomics/cobra/summary/model_summary.py
metabomics/cobra/summary/reaction_summary.py
metabomics/cobra/summary/summary.py
metabomics/cobra/test/__init__.py
metabomics/cobra/test/conftest.py
metabomics/cobra/test/data/update_pickles.py
metabomics/cobra/test/test_core/conftest.py
metabomics/cobra/test/test_core/test_configuration.py
metabomics/cobra/test/test_core/test_core_reaction.py
metabomics/cobra/test/test_core/test_dictlist.py
metabomics/cobra/test/test_core/test_gene.py
metabomics/cobra/test/test_core/test_group.py
metabomics/cobra/test/test_core/test_metabolite.py
metabomics/cobra/test/test_core/test_model.py
metabomics/cobra/test/test_core/test_solution.py
metabomics/cobra/test/test_flux_analysis/conftest.py
metabomics/cobra/test/test_flux_analysis/test_deletion.py
metabomics/cobra/test/test_flux_analysis/test_fastcc.py
metabomics/cobra/test/test_flux_analysis/test_gapfilling.py
metabomics/cobra/test/test_flux_analysis/test_geometric.py
metabomics/cobra/test/test_flux_analysis/test_helpers.py
metabomics/cobra/test/test_flux_analysis/test_loopless.py
metabomics/cobra/test/test_flux_analysis/test_moma.py
metabomics/cobra/test/test_flux_analysis/test_parsimonious.py
metabomics/cobra/test/test_flux_analysis/test_phenotype_phase_plane.py
metabomics/cobra/test/test_flux_analysis/test_reaction.py
metabomics/cobra/test/test_flux_analysis/test_room.py
metabomics/cobra/test/test_flux_analysis/test_variability.py
metabomics/cobra/test/test_io/conftest.py
metabomics/cobra/test/test_io/test_annotation.py
metabomics/cobra/test/test_io/test_annotation_format.py
metabomics/cobra/test/test_io/test_io_order.py
metabomics/cobra/test/test_io/test_json.py
metabomics/cobra/test/test_io/test_mat.py
metabomics/cobra/test/test_io/test_notes.py
metabomics/cobra/test/test_io/test_pickle.py
metabomics/cobra/test/test_io/test_sbml.py
metabomics/cobra/test/test_io/test_yaml.py
metabomics/cobra/test/test_io/test_web/test_load.py
metabomics/cobra/test/test_manipulation/__init__.py
metabomics/cobra/test/test_manipulation/test_annotate.py
metabomics/cobra/test/test_manipulation/test_delete.py
metabomics/cobra/test/test_manipulation/test_modify.py
metabomics/cobra/test/test_manipulation/test_validate.py
metabomics/cobra/test/test_medium/test_boundary_types.py
metabomics/cobra/test/test_medium/test_minimal_medium.py
metabomics/cobra/test/test_sampling/conftest.py
metabomics/cobra/test/test_sampling/test_achr.py
metabomics/cobra/test/test_sampling/test_optgp.py
metabomics/cobra/test/test_sampling/test_sampling.py
metabomics/cobra/test/test_summary/test_metabolite_summary.py
metabomics/cobra/test/test_summary/test_model_summary.py
metabomics/cobra/test/test_summary/test_reaction_summary.py
metabomics/cobra/test/test_util/test_array.py
metabomics/cobra/test/test_util/test_context.py
metabomics/cobra/test/test_util/test_process_pool.py
metabomics/cobra/test/test_util/test_solver.py
metabomics/cobra/test/test_util/test_util.py
metabomics/cobra/util/__init__.py
metabomics/cobra/util/array.py
metabomics/cobra/util/context.py
metabomics/cobra/util/process_pool.py
metabomics/cobra/util/solver.py
metabomics/cobra/util/util.py
metabomics/extensions/__init__.py
metabomics/extensions/metabolite_extantions.py
metabomics/extensions/model_extantions.py
metabomics/extensions/tests.py
metabomics/models/gomari_vae_keras.py
metabomics/models/gomari_vae_pytorch.py
metabomics/omicNetwork/Network_Construction.py
metabomics/omicNetwork/edge.py
metabomics/omicNetwork/graph.py
metabomics/omicNetwork/graph_visualizer.py
metabomics/omicNetwork/helper.py
metabomics/omicNetwork/main.py
metabomics/omicNetwork/main_local.py
metabomics/omicNetwork/main_local_uniprot.py
metabomics/omicNetwork/prepareData.py
metabomics/omicNetwork/vertex.py
metabomics/preprocessing/__init__.py
metabomics/preprocessing/metabolite_diff_transformer.py
metabomics/preprocessing/metabolitics_pipeline.py
metabomics/preprocessing/metabolitics_transformer.py
metabomics/preprocessing/metabolitics_transformer_second.py
metabomics/preprocessing/pathway_reaction_enrichment.py
metabomics/preprocessing/pathway_transformer.py
metabomics/preprocessing/reaction_diff_transformer.py
metabomics/preprocessing/tests.py
metabomics/preprocessing/transport_pathway_elimination.py
metabomics/scripts/python_scripts/metabolite_mapper.py
metabomics/src/dataset_class/metabolite_dataset.py
metabomics/src/imputer/vae_imputer.py
metabomics/src/imputer/vae_imputer_model copy.py
metabomics/src/imputer/vae_imputer_model.py
metabomics/src/vae/vae_model.py
metabomics/utils/__init__.py
metabomics/utils/constants.py
metabomics/utils/io_utils.py
metabomics/utils/properties.py
metabomics/utils/tests.py