.gitignore
.travis.yml
LICENSE
MANIFEST.in
Makefile
README.md
requirements.txt
setup.cfg
setup.py
metabolitics/__init__.py
metabolitics/tests.py
metabolitics.egg-info/PKG-INFO
metabolitics.egg-info/SOURCES.txt
metabolitics.egg-info/dependency_links.txt
metabolitics.egg-info/requires.txt
metabolitics.egg-info/top_level.txt
metabolitics/analysis/__init__.py
metabolitics/analysis/analysis.py
metabolitics/analysis/tests.py
metabolitics/datasets/naming/cheBl-mapping.json
metabolitics/datasets/naming/hmdb-mapping.json
metabolitics/datasets/naming/kegg-mapping.json
metabolitics/datasets/naming/pubChem-mapping.json
metabolitics/datasets/naming/recon-naming.json~
metabolitics/datasets/naming/toy-mapping.json
metabolitics/datasets/network_models/recon2.json
metabolitics/extensions/__init__.py
metabolitics/extensions/metabolite_extantions.py
metabolitics/extensions/model_extantions.py
metabolitics/extensions/tests.py
metabolitics/preprocessing/__init__.py
metabolitics/preprocessing/metabolitics_pipeline.py
metabolitics/preprocessing/metabolitics_transformer.py
metabolitics/preprocessing/pathway_reaction_enrichment.py
metabolitics/preprocessing/pathway_transformer.py
metabolitics/preprocessing/reaction_diff_transformer.py
metabolitics/preprocessing/tests.py
metabolitics/preprocessing/transport_pathway_elimination.py
metabolitics/utils/__init__.py
metabolitics/utils/io_utils.py
metabolitics/utils/tests.py
source/conf.py
source/index.rst