from .agglomerate import (
    agglomerate_mesh,
    agglomerate_split_mesh,
    aggregate_features,
    blow_up_features,
    fix_split_labels,
    multicut_ward,
)
from .cave import (
    find_nucleus_point,
    get_synapse_mapping,
    get_synapses,
    get_synapses_at_oldest,
)
from .datasets import fetch_sample_mesh
from .decompose import (
    compute_geometry_vectors,
    compute_hks,
    construct_bspline_basis,
    construct_bspline_filter,
    decompose_laplacian,
    decompose_laplacian_by_bands,
    decompose_mesh,
    get_hks_filter,
    spectral_geometry_filter,
)
from .graph import compute_edge_widths, condense_mesh_to_graph
from .io import (
    interpret_path,
    read_array,
    read_condensed_edges,
    read_condensed_features,
    read_condensed_graph,
    read_id_to_mesh_map,
    save_array,
    save_condensed_edges,
    save_condensed_features,
    save_condensed_graph,
    save_id_to_mesh_map,
)
from .label_propagation import label_propagation
from .laplacian import area_matrix, compute_vertex_areas, cotangent_laplacian
from .morphometry_pipeline import component_morphometry_pipeline
from .pipeline import chunked_hks_pipeline, condensed_hks_pipeline
from .split import (
    MeshStitcher,
    apply_mesh_split,
    fit_mesh_split,
    fit_mesh_split_lap,
    fit_overlapping_mesh_split,
    get_submesh_borders,
    graph_laplacian_split,
)
from .types import interpret_mesh
from .utils import (
    combine_meshes,
    component_size_transform,
    compute_distances_to_point,
    edges_to_lines,
    fix_mesh,
    get_label_components,
    graph_to_adjacency,
    largest_mesh_component,
    mesh_connected_components,
    mesh_n_connected_components,
    mesh_to_adjacency,
    mesh_to_edges,
    mesh_to_poly,
    poly_to_mesh,
    project_points_to_mesh,
    rough_subset_mesh_by_indices,
    scale_mesh,
    shuffle_label_mapping,
    subset_mesh_by_indices,
    threshold_mesh_by_component_size,
)

# from .implicit_solver import HeatSolver

__all__ = [
    "compute_hks",
    "decompose_laplacian",
    "decompose_laplacian_by_bands",
    "decompose_mesh",
    "cotangent_laplacian",
    "area_matrix",
    "fit_mesh_split",
    "apply_mesh_split",
    "interpret_mesh",
    "get_submesh_borders",
    "fit_overlapping_mesh_split",
    "mesh_to_adjacency",
    "mesh_to_poly",
    "poly_to_mesh",
    "MeshStitcher",
    "fix_mesh",
    "project_points_to_mesh",
    "chunked_hks_pipeline",
    "condensed_hks_pipeline",
    "get_label_components",
    "mesh_to_edges",
    "component_size_transform",
    "spectral_geometry_filter",
    "get_hks_filter",
    "subset_mesh_by_indices",
    "largest_mesh_component",
    "multicut_ward",
    "agglomerate_mesh",
    "fix_split_labels",
    "agglomerate_split_mesh",
    "aggregate_features",
    "shuffle_label_mapping",
    "compute_distances_to_point",
    "find_nucleus_point",
    "compute_vertex_areas",
    "blow_up_features",
    "graph_laplacian_split",
    "edges_to_lines",
    "fit_mesh_split_lap",
    "construct_bspline_basis",
    "construct_bspline_filter",
    "compute_geometry_vectors",
    "rough_subset_mesh_by_indices",
    "mesh_connected_components",
    "combine_meshes",
    "threshold_mesh_by_component_size",
    "compute_edge_widths",
    "condense_mesh_to_graph",
    "save_condensed_features",
    "read_condensed_features",
    "save_condensed_edges",
    "read_condensed_edges",
    "save_id_to_mesh_map",
    "read_id_to_mesh_map",
    "interpret_path",
    "get_synapse_mapping",
    "graph_to_adjacency",
    "read_condensed_graph",
    "save_condensed_graph",
    "scale_mesh",
    "component_morphometry_pipeline",
    "save_array",
    "read_array",
    "get_synapses",
    "get_synapses_at_oldest",
    "label_propagation",
    "mesh_n_connected_components",
    "fetch_sample_mesh",
    # "HeatSolver",
]
