"""Module providing access to various data types and utilities."""

from .arrays import ArrayType
from .beads import (
    NEUTRAL_BETA,
    MethylData,
    RawData,
    ReferenceMethylData,
    _overlap_indices,
    idat_basepaths,
    is_valid_idat_basepath,
)
from .cache import get_id_tuple, input_args_id, memoize
from .chromosome import Chromosome
from .cnv import CNV, ZIP_ENDING, Annotation, _get_cgsegment
from .genetic_data import (
    CHROMOSOME_DATA,
    GAPS,
    GENES,
    IMPORTANT_GENES,
)
from .idat import IdatParser
from .manifests import Manifest
from .plots import (
    CNVPlot,
    cnv_plot_from_data,
    get_cn_summary,
    read_cnv_data_from_disk,
)
from .probes import Channel, InfiniumDesignType, ProbeType

__all__ = [
    "Annotation",
    "ArrayType",
    "CHROMOSOME_DATA",
    "CNV",
    "CNVPlot",
    "NEUTRAL_BETA",
    "input_args_id",
    "Channel",
    "Chromosome",
    "GAPS",
    "GENES",
    "IMPORTANT_GENES",
    "IdatParser",
    "InfiniumDesignType",
    "Manifest",
    "MethylData",
    "ProbeType",
    "RawData",
    "ReferenceMethylData",
    "ZIP_ENDING",
    "cache",
    "cnv_plot_from_data",
    "get_cn_summary",
    "get_id_tuple",
    "idat_basepaths",
    "is_valid_idat_basepath",
    "memoize",
    "_overlap_indices",
    "_get_cgsegment",
    "read_cnv_data_from_disk",
]
