Installation 
============


You can install meneco by running::

	$ pip install meneco


Usage
=====

Typical usage is::
	
	$ meneco.py draftnetwork.sbml repairnetwork.sbml seeds.sbml targets.sbml
	
For more options you can ask for help as follows:

	$ meneco --h
	    usage: meneco.py [-h] [--enumerate] draftnetwork repairnetwork seeds targets
	
	    positional arguments:
	      draftnetwork   metabolic network in SBML format
	      repairnetwork  metabolic network in SBML format
	      seeds          seeds in SBML format
	      targets        targets in SBML format
	
	    optional arguments:
	      -h, --help     show this help message and exit
	      --enumerate    enumerate all minimal completions


Samples
=======

Sample files for the reconstruction of ectocarpus are available here:
      ectocyc.sbml_ metacyc_16-5.sbml_ seeds.sbml_ targets.sbml_

.. _ectocyc.sbml: http://bioasp.github.io/downloads/samples/ectodata/ectocyc.sbml
.. _metacyc_16-5.sbml: http://bioasp.github.io/downloads/samples/ectodata/metacyc_16-5.sbml
.. _seeds.sbml: http://bioasp.github.io/downloads/samples/ectodata/seeds.sbml
.. _targets.sbml: http://bioasp.github.io/downloads/samples/ectodata/targets.sbml

