LICENSE
MANIFEST.in
README.md
manage.py
setup.py
analyses/__init__.py
analyses/admin.py
analyses/apps.py
analyses/forms.py
analyses/models.py
analyses/tasks.py
analyses/tests.py
analyses/urls.py
analyses/views.py
analyses/migrations/0001_initial.py
analyses/migrations/__init__.py
bin/mendelmd
blog/__init__.py
blog/admin.py
blog/apps.py
blog/models.py
blog/tests.py
blog/views.py
blog/migrations/__init__.py
cases/__init__.py
cases/admin.py
cases/forms.py
cases/models.py
cases/tests.py
cases/urls.py
cases/views.py
cases/migrations/0001_initial.py
cases/migrations/__init__.py
dashboard/__init__.py
dashboard/admin.py
dashboard/models.py
dashboard/tests.py
dashboard/urls.py
dashboard/views.py
databases/__init__.py
databases/forms.py
databases/models.py
databases/tests.py
databases/urls.py
databases/views.py
databases/management/__init__.py
databases/management/commands/__init__.py
databases/management/commands/_private.py
databases/management/commands/celery.py
databases/management/commands/extract_individuals.py
databases/management/commands/import_1000genomes.py
databases/management/commands/import_dbnfsp.py
databases/management/commands/import_hgmd.py
databases/management/commands/populate.py
databases/management/commands/populate_varisnp.py
databases/migrations/0001_initial.py
databases/migrations/__init__.py
diseases/__init__.py
diseases/models.py
diseases/tests.py
diseases/urls.py
diseases/views.py
diseases/migrations/0001_initial.py
diseases/migrations/__init__.py
django_select2/__init__.py
django_select2/cache.py
django_select2/conf.py
django_select2/forms.py
django_select2/models.py
django_select2/urls.py
django_select2/views.py
docs/Makefile
docs/make.bat
docs/Diagrams/Annotation Pipeline.graphml
docs/Diagrams/Annotation_Pipeline.png
docs/source/admin_guide.rst
docs/source/annotation.rst
docs/source/annotation.txt
docs/source/clinical_cases.rst
docs/source/conf.py
docs/source/deploy.rst
docs/source/development.rst
docs/source/extension.rst
docs/source/filter_analysis.rst
docs/source/index.rst
docs/source/installation.rst
files/__init__.py
files/admin.py
files/apps.py
files/forms.py
files/models.py
files/tasks.py
files/tests.py
files/urls.py
files/views.py
files/management/__init__.py
files/management/commands/__init__.py
files/management/commands/download_files.py
files/management/commands/import_files.py
files/management/commands/update_files.py
files/migrations/0001_initial.py
files/migrations/__init__.py
files/templatetags/__init__.py
files/templatetags/get_genotype.py
files/templatetags/paginate_tag.py
files/templatetags/paginator.py
files/templatetags/upload_tags.py
filter_analysis/__init__.py
filter_analysis/family_analysis.py
filter_analysis/filter_options.py
filter_analysis/forms.py
filter_analysis/models.py
filter_analysis/tests.py
filter_analysis/urls.py
filter_analysis/views.py
filter_analysis/migrations/0001_initial.py
filter_analysis/migrations/__init__.py
filter_analysis/templatetags/__init__.py
filter_analysis/templatetags/filter_extras.py
genes/__init__.py
genes/forms.py
genes/models.py
genes/mysql_bulk_insert.py
genes/tests.py
genes/urls.py
genes/views.py
genes/migrations/0001_initial.py
genes/migrations/__init__.py
genes/templatetags/__init__.py
genes/templatetags/gene_extras.py
helpers/__init__.py
helpers/aws_wrapper.py
helpers/b2_wrapper.py
helpers/scw_wrapper.py
individuals/__init__.py
individuals/admin.py
individuals/forms.py
individuals/models.py
individuals/tasks.py
individuals/tests.py
individuals/urls.py
individuals/views.py
individuals/migrations/0001_initial.py
individuals/migrations/__init__.py
individuals/templatetags/__init__.py
individuals/templatetags/get_genotype.py
individuals/templatetags/paginate_tag.py
individuals/templatetags/paginator.py
individuals/templatetags/upload_tags.py
mapps/__init__.py
mapps/admin.py
mapps/apps.py
mapps/models.py
mapps/tests.py
mapps/urls.py
mapps/views.py
mapps/migrations/0001_initial.py
mapps/migrations/__init__.py
mapps/templates/__init__.py
mendelmd/__init__.py
mendelmd/celery.py
mendelmd/local_settings.docker.py
mendelmd/local_settings.sample.py
mendelmd/settings.py
mendelmd/urls.py
mendelmd/views.py
mendelmd/wsgi.py
mendelmd.egg-info/PKG-INFO
mendelmd.egg-info/SOURCES.txt
mendelmd.egg-info/dependency_links.txt
mendelmd.egg-info/requires.txt
mendelmd.egg-info/top_level.txt
pagination/__init__.py
pagination/middleware.py
pagination/models.py
pagination/paginator.py
pagination/tests.py
pagination/templatetags/__init__.py
pagination/templatetags/pagination_tags.py
pathway_analysis/__init__.py
pathway_analysis/forms.py
pathway_analysis/models.py
pathway_analysis/tests.py
pathway_analysis/urls.py
pathway_analysis/views.py
pathway_analysis/migrations/0001_initial.py
pathway_analysis/migrations/__init__.py
projects/__init__.py
projects/admin.py
projects/apps.py
projects/forms.py
projects/models.py
projects/tasks.py
projects/tests.py
projects/urls.py
projects/views.py
projects/migrations/0001_initial.py
projects/migrations/__init__.py
samples/__init__.py
samples/admin.py
samples/apps.py
samples/forms.py
samples/models.py
samples/tests.py
samples/urls.py
samples/views.py
samples/management/__init__.py
samples/management/commands/__init__.py
samples/management/commands/update_sample_files.py
samples/migrations/0001_initial.py
samples/migrations/__init__.py
settings/__init__.py
settings/admin.py
settings/apps.py
settings/forms.py
settings/models.py
settings/tasks.py
settings/tests.py
settings/urls.py
settings/views.py
settings/migrations/0001_initial.py
settings/migrations/__init__.py
stats/__init__.py
stats/admin.py
stats/models.py
stats/tests.py
stats/urls.py
stats/views.py
tasks/__init__.py
tasks/admin.py
tasks/apps.py
tasks/models.py
tasks/tasks.py
tasks/tests.py
tasks/urls.py
tasks/views.py
tasks/migrations/0001_initial.py
tasks/migrations/__init__.py
templates/base.html
templates/base_large.html
templates/control_sidebar.html
templates/header.html
templates/main_sidebar.html
templates/messages.html
templates/navbar.html
templates/pagination.html
templates/account/account_inactive.html
templates/account/base.html
templates/account/email.html
templates/account/email_confirm.html
templates/account/email_confirmed.html
templates/account/login.html
templates/account/logout.html
templates/account/password_change.html
templates/account/password_reset.html
templates/account/password_reset_done.html
templates/account/password_reset_from_key.html
templates/account/password_reset_from_key_done.html
templates/account/password_set.html
templates/account/signup.html
templates/account/signup_closed.html
templates/account/verification_sent.html
templates/account/verified_email_required.html
templates/account/email/email_confirmation_message.txt
templates/account/email/email_confirmation_signup_message.txt
templates/account/email/email_confirmation_signup_subject.txt
templates/account/email/email_confirmation_subject.txt
templates/account/email/password_reset_key_message.txt
templates/account/email/password_reset_key_subject.txt
templates/account/messages/cannot_delete_primary_email.txt
templates/account/messages/email_confirmation_sent.txt
templates/account/messages/email_confirmed.txt
templates/account/messages/email_deleted.txt
templates/account/messages/logged_in.txt
templates/account/messages/logged_out.txt
templates/account/messages/password_changed.txt
templates/account/messages/password_set.txt
templates/account/messages/primary_email_set.txt
templates/account/messages/unverified_primary_email.txt
templates/account/snippets/already_logged_in.html
templates/admin/base_site.html
templates/archive/base.new.html
templates/archive/base.old.html
templates/archive/dashboard.backup.html
templates/archive/dashboard.base.html
templates/archive/dashboard.html
templates/archive/full_base.html
templates/archive/navbar.html
templates/dashboard/navbar.html
templates/pages/about.html
templates/pages/docs.html
templates/pages/index.html
upload/__init__.py
upload/admin.py
upload/apps.py
upload/models.py
upload/tasks.py
upload/tests.py
upload/urls.py
upload/views.py
variants/__init__.py
variants/admin.py
variants/models.py
variants/tests.py
variants/urls.py
variants/views.py
variants/migrations/0001_initial.py
variants/migrations/0002_variant_snpeff_func_class.py
variants/migrations/0003_variant_snpeff_codon_change.py
variants/migrations/0004_variant_snpeff_aa_change.py
variants/migrations/0005_auto_20190329_0209.py
variants/migrations/__init__.py
workers/__init__.py
workers/admin.py
workers/apps.py
workers/models.py
workers/tasks.py
workers/tests.py
workers/urls.py
workers/views.py
workers/migrations/0001_initial.py
workers/migrations/__init__.py