.editorconfig
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
LICENSE
README.md
conftest.py
mkdocs.yml
pyproject.toml
.github/workflows/code-quality-main.yaml
.github/workflows/code-quality-pr.yaml
.github/workflows/python-build.yaml
.github/workflows/tests.yaml
docs/gen_ref_pages.py
docs/index.md
docs/pipeline_configuration.md
docs/preprocessing_operation_prototypes.md
docs/terminology.md
docs/tokenization_tensorization.md
docs/javascripts/mathjax.js
src/MEDS_extract/__init__.py
src/MEDS_extract/convert_to_sharded_events.py
src/MEDS_extract/extract_code_metadata.py
src/MEDS_extract/finalize_MEDS_data.py
src/MEDS_extract/finalize_MEDS_metadata.py
src/MEDS_extract/merge_to_MEDS_cohort.py
src/MEDS_extract/shard_events.py
src/MEDS_extract/split_and_shard_subjects.py
src/MEDS_extract/utils.py
src/MEDS_extract.egg-info/PKG-INFO
src/MEDS_extract.egg-info/SOURCES.txt
src/MEDS_extract.egg-info/dependency_links.txt
src/MEDS_extract.egg-info/entry_points.txt
src/MEDS_extract.egg-info/requires.txt
src/MEDS_extract.egg-info/top_level.txt
src/MEDS_extract/configs/__init__.py
src/MEDS_extract/configs/_extract.yaml
src/MEDS_extract/configs/stage_configs/__init__.py
src/MEDS_extract/configs/stage_configs/convert_to_sharded_events.yaml
src/MEDS_extract/configs/stage_configs/extract_code_metadata.yaml
src/MEDS_extract/configs/stage_configs/finalize_MEDS_data.yaml
src/MEDS_extract/configs/stage_configs/finalize_MEDS_metadata.yaml
src/MEDS_extract/configs/stage_configs/merge_to_MEDS_cohort.yaml
src/MEDS_extract/configs/stage_configs/shard_events.yaml
src/MEDS_extract/configs/stage_configs/split_and_shard_subjects.yaml
tests/__init__.py
tests/test_convert_to_sharded_events.py
tests/test_extract.py
tests/test_extract_code_metadata.py
tests/test_extract_no_metadata.py
tests/test_finalize_MEDS_data.py
tests/test_finalize_MEDS_metadata.py
tests/test_merge_to_MEDS_cohort.py
tests/test_shard_events.py
tests/test_split_and_shard_subjects.py
tests/utils.py