.gitignore
Makefile
README.md
license
pyproject.toml
.cursor/rules/compression-storage.mdc
.cursor/rules/docstring-standards.mdc
.cursor/rules/jupyter-notebook-guidelines.mdc
.cursor/rules/project-structure.mdc
.github/workflows/ci.yml
example/example.ipynb
example/s0000/adrenal_gland_left.nii.gz
example/s0000/adrenal_gland_right.nii.gz
example/s0000/aorta.nii.gz
example/s0000/atrial_appendage_left.nii.gz
example/s0000/autochthon_left.nii.gz
example/s0000/autochthon_right.nii.gz
example/s0000/brachiocephalic_trunk.nii.gz
example/s0000/brachiocephalic_vein_left.nii.gz
example/s0000/brachiocephalic_vein_right.nii.gz
example/s0000/brain.nii.gz
example/s0000/clavicula_left.nii.gz
example/s0000/clavicula_right.nii.gz
example/s0000/colon.nii.gz
example/s0000/common_carotid_artery_left.nii.gz
example/s0000/common_carotid_artery_right.nii.gz
example/s0000/costal_cartilages.nii.gz
example/s0000/duodenum.nii.gz
example/s0000/esophagus.nii.gz
example/s0000/femur_left.nii.gz
example/s0000/femur_right.nii.gz
example/s0000/gallbladder.nii.gz
example/s0000/gluteus_maximus_left.nii.gz
example/s0000/gluteus_maximus_right.nii.gz
example/s0000/gluteus_medius_left.nii.gz
example/s0000/gluteus_medius_right.nii.gz
example/s0000/gluteus_minimus_left.nii.gz
example/s0000/gluteus_minimus_right.nii.gz
example/s0000/heart.nii.gz
example/s0000/hip_left.nii.gz
example/s0000/hip_right.nii.gz
example/s0000/humerus_left.nii.gz
example/s0000/humerus_right.nii.gz
example/s0000/iliac_artery_left.nii.gz
example/s0000/iliac_artery_right.nii.gz
example/s0000/iliac_vena_left.nii.gz
example/s0000/iliac_vena_right.nii.gz
example/s0000/iliopsoas_left.nii.gz
example/s0000/iliopsoas_right.nii.gz
example/s0000/inferior_vena_cava.nii.gz
example/s0000/kidney_cyst_left.nii.gz
example/s0000/kidney_cyst_right.nii.gz
example/s0000/kidney_left.nii.gz
example/s0000/kidney_right.nii.gz
example/s0000/liver.nii.gz
example/s0000/lung_lower_lobe_left.nii.gz
example/s0000/lung_lower_lobe_right.nii.gz
example/s0000/lung_middle_lobe_right.nii.gz
example/s0000/lung_upper_lobe_left.nii.gz
example/s0000/lung_upper_lobe_right.nii.gz
example/s0000/pancreas.nii.gz
example/s0000/portal_vein_and_splenic_vein.nii.gz
example/s0000/prostate.nii.gz
example/s0000/pulmonary_vein.nii.gz
example/s0000/rib_left_1.nii.gz
example/s0000/rib_left_10.nii.gz
example/s0000/rib_left_11.nii.gz
example/s0000/rib_left_12.nii.gz
example/s0000/rib_left_2.nii.gz
example/s0000/rib_left_3.nii.gz
example/s0000/rib_left_4.nii.gz
example/s0000/rib_left_5.nii.gz
example/s0000/rib_left_6.nii.gz
example/s0000/rib_left_7.nii.gz
example/s0000/rib_left_8.nii.gz
example/s0000/rib_left_9.nii.gz
example/s0000/rib_right_1.nii.gz
example/s0000/rib_right_10.nii.gz
example/s0000/rib_right_11.nii.gz
example/s0000/rib_right_12.nii.gz
example/s0000/rib_right_2.nii.gz
example/s0000/rib_right_3.nii.gz
example/s0000/rib_right_4.nii.gz
example/s0000/rib_right_5.nii.gz
example/s0000/rib_right_6.nii.gz
example/s0000/rib_right_7.nii.gz
example/s0000/rib_right_8.nii.gz
example/s0000/rib_right_9.nii.gz
example/s0000/sacrum.nii.gz
example/s0000/scapula_left.nii.gz
example/s0000/scapula_right.nii.gz
example/s0000/skull.nii.gz
example/s0000/small_bowel.nii.gz
example/s0000/spinal_cord.nii.gz
example/s0000/spleen.nii.gz
example/s0000/sternum.nii.gz
example/s0000/stomach.nii.gz
example/s0000/subclavian_artery_left.nii.gz
example/s0000/subclavian_artery_right.nii.gz
example/s0000/superior_vena_cava.nii.gz
example/s0000/thyroid_gland.nii.gz
example/s0000/trachea.nii.gz
example/s0000/urinary_bladder.nii.gz
example/s0000/vertebrae_C1.nii.gz
example/s0000/vertebrae_C2.nii.gz
example/s0000/vertebrae_C3.nii.gz
example/s0000/vertebrae_C4.nii.gz
example/s0000/vertebrae_C5.nii.gz
example/s0000/vertebrae_C6.nii.gz
example/s0000/vertebrae_C7.nii.gz
example/s0000/vertebrae_L1.nii.gz
example/s0000/vertebrae_L2.nii.gz
example/s0000/vertebrae_L3.nii.gz
example/s0000/vertebrae_L4.nii.gz
example/s0000/vertebrae_L5.nii.gz
example/s0000/vertebrae_S1.nii.gz
example/s0000/vertebrae_T1.nii.gz
example/s0000/vertebrae_T10.nii.gz
example/s0000/vertebrae_T11.nii.gz
example/s0000/vertebrae_T12.nii.gz
example/s0000/vertebrae_T2.nii.gz
example/s0000/vertebrae_T3.nii.gz
example/s0000/vertebrae_T4.nii.gz
example/s0000/vertebrae_T5.nii.gz
example/s0000/vertebrae_T6.nii.gz
example/s0000/vertebrae_T7.nii.gz
example/s0000/vertebrae_T8.nii.gz
example/s0000/vertebrae_T9.nii.gz
medmask/__init__.py
medmask/_version.py
medmask.egg-info/PKG-INFO
medmask.egg-info/SOURCES.txt
medmask.egg-info/dependency_links.txt
medmask.egg-info/requires.txt
medmask.egg-info/top_level.txt
medmask/compression/__init__.py
medmask/compression/zstd_codec.py
medmask/core/__init__.py
medmask/core/mapping.py
medmask/core/segmask.py
medmask/storage/__init__.py
medmask/storage/archivefile.py
medmask/storage/maskfile.py
medmask/utils/__init__.py
medmask/utils/utils.py
tests/test_archive_offset_bug.py
tests/test_axis_reversed.py
tests/test_mask.py
tests/test_mask_archive.py
tests/test_mask_file.py