LICENSE
README.md
medicc2
pyproject.toml
setup.py
fstlib/__init__.py
fstlib/algos.py
fstlib/core.py
fstlib/ext.py
fstlib/factory.py
fstlib/logging_conf.yaml
fstlib/test_fstlib.py
fstlib/tools.py
fstlib/cext/__init__.py
fstlib/cext/cintegral_types.pxd
fstlib/cext/cios.pxd
fstlib/cext/cmemory.pxd
fstlib/cext/cops.h
fstlib/cext/cops.pxd
fstlib/cext/cpywrapfst.pxd
fstlib/cext/cutility.pxd
fstlib/cext/ops.cpp
fstlib/cext/ops.pyx
fstlib/cext/pywrapfst.cpp
fstlib/cext/pywrapfst.pxd
fstlib/cext/pywrapfst.pyx
medicc/__init__.py
medicc/ancestors.py
medicc/bootstrap.py
medicc/core.py
medicc/event_reconstruction.py
medicc/factory.py
medicc/io.py
medicc/logging_conf.yaml
medicc/nj.py
medicc/plot.py
medicc/sim.py
medicc/stats.py
medicc/test_fsts.py
medicc/test_medicc.py
medicc/tools.py
medicc/objects/Davoli_2013_TSG_OG_genes.bed
medicc/objects/hg19_chromosome_arms.bed
medicc/objects/hg38_chromosome_arms.bed
medicc/objects/no_wgd_asymm.fst
medicc/objects/wgd_1_asymm.fst
medicc/objects/wgd_2_asymm.fst
medicc/objects/wgd_asymm.fst
medicc/objects/wgd_total_cn_1_asymm.fst
medicc/objects/wgd_total_cn_asymm.fst
medicc/objects/wgd_x2_1_asymm.fst
medicc/objects/wgd_x2_asymm.fst
medicc2.egg-info/PKG-INFO
medicc2.egg-info/SOURCES.txt
medicc2.egg-info/dependency_links.txt
medicc2.egg-info/requires.txt
medicc2.egg-info/top_level.txt