# medaka requirements. 
# Add comments to keep track of why we are using particular versions
# don't do these on the same line as CI likes to fiddle them occasionally
cffi
edlib
h5py~=3.10.0
intervaltree
# 2.0.0 breaks all-the-things
numpy>=1.21.0,<2.0.0
ont-mappy
ont_fast5_api
ont-parasail
# 0.16.0 is broken, various others too
packaging
pysam>=0.16.0.1
# 0.2.0 has `min_coverage` parameter
pyspoa>=0.2.1
requests
toml
torch~=2.3
tqdm
wurlitzer
