LICENSE.md
MANIFEST.in
Makefile
README.md
build.py
requirements.txt
setup.py
images/ONT_logo_590x106.png
medaka/__init__.py
medaka/common.py
medaka/datastore.py
medaka/executor.py
medaka/features.py
medaka/keras_ext.py
medaka/labels.py
medaka/medaka.py
medaka/medaka_counts.py
medaka/methdaka.py
medaka/models.py
medaka/options.py
medaka/prediction.py
medaka/rle.py
medaka/smolecule.py
medaka/stitch.py
medaka/training.py
medaka/variant.py
medaka/vcf.py
medaka.egg-info/PKG-INFO
medaka.egg-info/SOURCES.txt
medaka.egg-info/dependency_links.txt
medaka.egg-info/entry_points.txt
medaka.egg-info/not-zip-safe
medaka.egg-info/requires.txt
medaka.egg-info/top_level.txt
medaka/data/r103_min_high_g345_model.hdf5
medaka/data/r103_min_high_g360_model.hdf5
medaka/data/r103_prom_high_g360_model.hdf5
medaka/data/r103_prom_snp_g3210_model.hdf5
medaka/data/r103_prom_variant_g3210_model.hdf5
medaka/data/r941_min_high_g340_rle_model.hdf5
medaka/data/r941_min_high_g344_model.hdf5
medaka/data/r941_min_high_g351_model.hdf5
medaka/data/r941_min_high_g360_model.hdf5
medaka/data/r941_prom_high_g344_model.hdf5
medaka/data/r941_prom_high_g360_model.hdf5
medaka/data/r941_prom_snp_g360_model.hdf5
medaka/data/r941_prom_variant_g360_model.hdf5
scripts/medaka_consensus
scripts/medaka_variant
scripts/mini_align
src/fastrle.c
src/fastrle.h
src/khash.h
src/kseq.h
src/kstring.c
src/kstring.h
src/kvec.h
src/medaka_bamiter.c
src/medaka_bamiter.h
src/medaka_common.c
src/medaka_common.h
src/medaka_counts.c
src/medaka_counts.h
src/medaka_pytrimbam.c
src/medaka_pytrimbam.h
src/medaka_trimbam.c
src/medaka_trimbam.h