MANIFEST.in
setup.cfg
setup.py
MDTraj/__init__.py
MDTraj/__init__.pyc
MDTraj/arc.py
MDTraj/arc.pyc
MDTraj/compatibility.py
MDTraj/compatibility.pyc
MDTraj/hdf5.py
MDTraj/hdf5.pyc
MDTraj/io.py
MDTraj/io.pyc
MDTraj/mdcrd.py
MDTraj/mdcrd.pyc
MDTraj/netcdf.py
MDTraj/netcdf.pyc
MDTraj/rmsd.py
MDTraj/rmsd.pyc
MDTraj/topology.py
MDTraj/topology.pyc
MDTraj/trajectory.py
MDTraj/trajectory.pyc
MDTraj/version.py
MDTraj/version.pyc
MDTraj/binpos/binpos.c
MDTraj/binpos/binpos.pyx
MDTraj/binpos/binposlib.pxd
MDTraj/binpos/include/binposplugin.h
MDTraj/binpos/include/largefiles.h
MDTraj/binpos/include/molfile_plugin.h
MDTraj/binpos/include/vmdplugin.h
MDTraj/binpos/src/binposplugin.c
MDTraj/dcd/dcd.c
MDTraj/dcd/dcd.pyx
MDTraj/dcd/dcdlib.pxd
MDTraj/dcd/include/dcdplugin.h
MDTraj/dcd/include/endianswap.h
MDTraj/dcd/include/fastio.h
MDTraj/dcd/include/largefiles.h
MDTraj/dcd/include/molfile_plugin.h
MDTraj/dcd/include/vmdplugin.h
MDTraj/dcd/src/dcdplugin.c
MDTraj/geometry/__init__.py
MDTraj/geometry/__init__.pyc
MDTraj/geometry/alignment.py
MDTraj/geometry/alignment.pyc
MDTraj/geometry/angle.py
MDTraj/geometry/angle.pyc
MDTraj/geometry/dihedral.py
MDTraj/geometry/dihedral.pyc
MDTraj/geometry/distance.py
MDTraj/geometry/distance.pyc
MDTraj/geometry/hbond.py
MDTraj/geometry/hbond.pyc
MDTraj/geometry/internal.py
MDTraj/geometry/internal.pyc
MDTraj/geometry/rg.py
MDTraj/geometry/rg.pyc
MDTraj/geometry/sasa.py
MDTraj/geometry/sasa.pyc
MDTraj/geometry/include/ssetools.h
MDTraj/geometry/src/geometry.c
MDTraj/geometry/src/sasa.c
MDTraj/geometry/test/test_alignment.py
MDTraj/geometry/test/test_alignment.pyc
MDTraj/geometry/test/test_distance.py
MDTraj/geometry/test/test_distance.pyc
MDTraj/geometry/test/test_geometry.py
MDTraj/geometry/test/test_geometry.pyc
MDTraj/geometry/test/test_hbonds.py
MDTraj/geometry/test/test_hbonds.pyc
MDTraj/geometry/test/test_sasa.py
MDTraj/geometry/test/test_sasa.pyc
MDTraj/geometry/test/__pycache__/test_alignment.cpython-33.pyc
MDTraj/geometry/test/__pycache__/test_geometry.cpython-33.pyc
MDTraj/geometry/test/__pycache__/test_rmsd.cpython-33.pyc
MDTraj/pdb/README.md
MDTraj/pdb/__init__.py
MDTraj/pdb/__init__.pyc
MDTraj/pdb/element.py
MDTraj/pdb/element.pyc
MDTraj/pdb/pdbfile.py
MDTraj/pdb/pdbfile.pyc
MDTraj/pdb/pdbstructure.py
MDTraj/pdb/pdbstructure.pyc
MDTraj/pdb/test_pdb.py
MDTraj/pdb/test_pdb.pyc
MDTraj/pdb/__pycache__/__init__.cpython-33.pyc
MDTraj/pdb/__pycache__/element.cpython-33.pyc
MDTraj/pdb/__pycache__/pdbfile.cpython-33.pyc
MDTraj/pdb/__pycache__/pdbstructure.cpython-33.pyc
MDTraj/pdb/__pycache__/test_pdb.cpython-33.pyc
MDTraj/pdb/data/pdbNames.xml
MDTraj/pdb/data/residues.xml
MDTraj/reporters/__init__.py
MDTraj/reporters/__init__.pyc
MDTraj/reporters/basereporter.py
MDTraj/reporters/basereporter.pyc
MDTraj/reporters/dcdreporter.py
MDTraj/reporters/dcdreporter.pyc
MDTraj/reporters/hdf5reporter.py
MDTraj/reporters/hdf5reporter.pyc
MDTraj/reporters/netcdfreporter.py
MDTraj/reporters/netcdfreporter.pyc
MDTraj/reporters/__pycache__/__init__.cpython-33.pyc
MDTraj/reporters/__pycache__/basereporter.cpython-33.pyc
MDTraj/reporters/__pycache__/dcdreporter.cpython-33.pyc
MDTraj/reporters/__pycache__/hdf5reporter.cpython-33.pyc
MDTraj/reporters/__pycache__/netcdfreporter.cpython-33.pyc
MDTraj/rmsd/README.md
MDTraj/rmsd/_rmsd.c
MDTraj/rmsd/_rmsd.pyx
MDTraj/rmsd/include/sse_swizzle.h
MDTraj/rmsd/include/theobald_rmsd.h
MDTraj/rmsd/include/util.h
MDTraj/rmsd/src/theobald_rmsd.c
MDTraj/testing/__init__.py
MDTraj/testing/__init__.pyc
MDTraj/testing/docscrape.py
MDTraj/testing/docscrape.pyc
MDTraj/testing/docstrings.py
MDTraj/testing/docstrings.pyc
MDTraj/testing/nosetester.py
MDTraj/testing/nosetester.pyc
MDTraj/testing/testing.py
MDTraj/testing/testing.pyc
MDTraj/testing/__pycache__/__init__.cpython-33.pyc
MDTraj/testing/__pycache__/docstrings.cpython-33.pyc
MDTraj/testing/__pycache__/testing.cpython-33.pyc
MDTraj/testing/reference/1bpi.pdb
MDTraj/testing/reference/2EQQ.pdb
MDTraj/testing/reference/4K6Q.pdb
MDTraj/testing/reference/4waters.arc
MDTraj/testing/reference/4waters.pdb
MDTraj/testing/reference/Rg_traj_ref.dat
MDTraj/testing/reference/atom_distances_traj_ref.dat
MDTraj/testing/reference/atom_pairs.dat
MDTraj/testing/reference/bpti.pdb
MDTraj/testing/reference/frame0.binpos
MDTraj/testing/reference/frame0.binpos.h5
MDTraj/testing/reference/frame0.dcd
MDTraj/testing/reference/frame0.dcd.h5
MDTraj/testing/reference/frame0.h5
MDTraj/testing/reference/frame0.mdcrd
MDTraj/testing/reference/frame0.mdcrdbox
MDTraj/testing/reference/frame0.nc
MDTraj/testing/reference/frame0.pdb
MDTraj/testing/reference/frame0.trr
MDTraj/testing/reference/frame0.xtc
MDTraj/testing/reference/frame0.xtc.h5
MDTraj/testing/reference/g_sas_ref.dat
MDTraj/testing/reference/legacy_msmbuilder_trj0.lh5
MDTraj/testing/reference/mdcrd.nc
MDTraj/testing/reference/multiframe.pdb
MDTraj/testing/reference/native.pdb
MDTraj/testing/reference/native2.pdb
MDTraj/testing/reference/native2.xml
MDTraj/testing/reference/traj.h5
MDTraj/tests/__init__.py
MDTraj/tests/__init__.pyc
MDTraj/tests/test_arc.py
MDTraj/tests/test_arc.pyc
MDTraj/tests/test_binpos.py
MDTraj/tests/test_binpos.pyc
MDTraj/tests/test_compatibility.py
MDTraj/tests/test_compatibility.pyc
MDTraj/tests/test_dcd.py
MDTraj/tests/test_dcd.pyc
MDTraj/tests/test_hdf5.py
MDTraj/tests/test_hdf5.pyc
MDTraj/tests/test_io.py
MDTraj/tests/test_io.pyc
MDTraj/tests/test_mdconvert.py
MDTraj/tests/test_mdconvert.pyc
MDTraj/tests/test_mdcrd.py
MDTraj/tests/test_mdcrd.pyc
MDTraj/tests/test_netcdf.py
MDTraj/tests/test_netcdf.pyc
MDTraj/tests/test_reporter.py
MDTraj/tests/test_reporter.pyc
MDTraj/tests/test_rmsd.py
MDTraj/tests/test_rmsd.pyc
MDTraj/tests/test_topology.py
MDTraj/tests/test_topology.pyc
MDTraj/tests/test_trajectory.py
MDTraj/tests/test_trajectory.pyc
MDTraj/tests/test_trr.py
MDTraj/tests/test_trr.pyc
MDTraj/tests/test_xml.py
MDTraj/tests/test_xml.pyc
MDTraj/tests/test_xtc.py
MDTraj/tests/test_xtc.pyc
MDTraj/tests/__pycache__/__init__.cpython-33.pyc
MDTraj/tests/__pycache__/test_binpos.cpython-33.pyc
MDTraj/tests/__pycache__/test_compatibility.cpython-33.pyc
MDTraj/tests/__pycache__/test_dcd.cpython-33.pyc
MDTraj/tests/__pycache__/test_hdf5.cpython-33.pyc
MDTraj/tests/__pycache__/test_io.cpython-33.pyc
MDTraj/tests/__pycache__/test_mdconvert.cpython-33.pyc
MDTraj/tests/__pycache__/test_netcdf.cpython-33.pyc
MDTraj/tests/__pycache__/test_reporter.cpython-33.pyc
MDTraj/tests/__pycache__/test_rmsd.cpython-33.pyc
MDTraj/tests/__pycache__/test_trajectory.cpython-33.pyc
MDTraj/tests/__pycache__/test_trr.cpython-33.pyc
MDTraj/tests/__pycache__/test_xml.cpython-33.pyc
MDTraj/tests/__pycache__/test_xtc.cpython-33.pyc
MDTraj/tests/performance/test_readwrite.py
MDTraj/unit/__init__.pyc
MDTraj/unit/basedimension.pyc
MDTraj/unit/baseunit.pyc
MDTraj/unit/constants.pyc
MDTraj/unit/doctests.pyc
MDTraj/unit/mymatrix.pyc
MDTraj/unit/prefix.pyc
MDTraj/unit/quantity.pyc
MDTraj/unit/standard_dimensions.pyc
MDTraj/unit/unit.pyc
MDTraj/unit/unit_definitions.pyc
MDTraj/unit/unit_math.pyc
MDTraj/unit/unit_operators.pyc
MDTraj/utils/__init__.py
MDTraj/utils/__init__.pyc
MDTraj/utils/arrays.py
MDTraj/utils/arrays.pyc
MDTraj/utils/delay_import.py
MDTraj/utils/delay_import.pyc
MDTraj/utils/ffi.py
MDTraj/utils/ffi.pyc
MDTraj/utils/test.py
MDTraj/utils/test.pyc
MDTraj/utils/unit.py
MDTraj/utils/unit.pyc
MDTraj/utils/unitcell.py
MDTraj/utils/unitcell.pyc
MDTraj/utils/__pycache__/__init__.cpython-33.pyc
MDTraj/utils/__pycache__/arrays.cpython-33.pyc
MDTraj/utils/__pycache__/delay_import.cpython-33.pyc
MDTraj/utils/__pycache__/test.cpython-33.pyc
MDTraj/utils/__pycache__/unit.cpython-33.pyc
MDTraj/utils/__pycache__/unitcell.cpython-33.pyc
MDTraj/xtc/trr.c
MDTraj/xtc/trr.pyx
MDTraj/xtc/trrlib.pxd
MDTraj/xtc/xdrlib.pxd
MDTraj/xtc/xtc.c
MDTraj/xtc/xtc.pyx
MDTraj/xtc/include/Makefile.am
MDTraj/xtc/include/Makefile.in
MDTraj/xtc/include/xdrfile.h
MDTraj/xtc/include/xdrfile_trr.h
MDTraj/xtc/include/xdrfile_xtc.h
MDTraj/xtc/src/README
MDTraj/xtc/src/trr2xtc.c
MDTraj/xtc/src/xdrfile.c
MDTraj/xtc/src/xdrfile_c_test.c
MDTraj/xtc/src/xdrfile_trr.c
MDTraj/xtc/src/xdrfile_xtc.c
examples/example_clustering.py
examples/example_openmm.py
examples/example_pca.py
examples/example_rmsd.py
mdtraj.egg-info/PKG-INFO
mdtraj.egg-info/SOURCES.txt
mdtraj.egg-info/dependency_links.txt
mdtraj.egg-info/not-zip-safe
mdtraj.egg-info/requires.txt
mdtraj.egg-info/top_level.txt
scripts/mdconvert
scripts/mdinspect